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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
soxR
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Related strains
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Strains Search
|
Search strains by gene name:
soxR
Search strains by all related name:
soxR b4063 ECK4055 JW4024 marC
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General information (Go to Linear View: )
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Gene Name
|
soxR
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Alternative name
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b4063,ECK4055,JW4024,marC
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|
Location, Length
|
4,281,059 - 4,281,523
(
+
)
;
92.14
min
;
465
(bp) ,
154
(aa)
|
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Product
|
DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing
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Note
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ECK4055:JW4024:b4063
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Function
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PID
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85676815
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
SOXR_ECOLI
(
P0ACS2
;
P22538; Q2M6P1; Q53442
)
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- Protein name
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RecName: Full=Redox-sensitive transcriptional activator soxR;
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- Synonyms
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- Gene name
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Name=soxR; Synonyms=marC; OrderedLocusNames=b4063, JW4024;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
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redox-sensitive transcriptional activator SoxR [Escherichia coli O157:H7 EDL933]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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MMBR References
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Nucleic Acids Res. 1991;19:4479-4484
Molecular characterization of the soxRS genes of Escherichia coli: two genes control a superoxide stress regulon.
Amabile-Cuevas, C. F., and B. Demple.
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| Sequences |
Amino acid
FASTA format
|
0001 MEKKLPRIKA LLTPGEVAKR SGVAVSALHF YESKGLITSI RNSGNQRRYK RDVLRYVAII KIAQRIGIPL
0071 ATIGEAFGVL PEGHTLSAKE WKQLSSQWRE ELDRRIHTLV ALRDELDGCI GCGCLSRSDC PLRNPGDRLG
0141 EEGTGARLLE DEQN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTCTGATGG GACATAAATC TGCCTCTTTT
-070 CAGTGTTCAG TTCGTTAATT CATCTGTTGG GGAGTATAAT TCCTCAAGTT AACTTGAGGT AAAGCGATTT
0001 atggaaaaga aattaccccg cattaaagcg ctgctaaccc ccggcgaagt ggcgaaacgc agcggtgtgg
0071 cggtatcggc gctgcatttc tatgaaagta aagggttgat taccagtatc cgtaacagcg gcaatcagcg
0141 gcgatataaa cgtgatgtgt tgcgatatgt tgcaattatc aaaattgctc agcgtattgg cattccgctg
0211 gcgaccattg gtgaagcgtt tggcgtgttg cccgaagggc atacgttaag tgcgaaagag tggaaacagc
0281 tttcgtccca atggcgagaa gagttggatc ggcgcattca taccttagtg gcgctgcgtg acgaactgga
0351 cggatgtatt ggttgtggct gcctttcgcg cagtgattgc ccgttgcgta acccgggcga ccgcttagga
0421 gaagaaggta ccggcgcacg cttgctggaa gatgaacaaa actaaAGCGC CACAAGGGCG CTTTAGTTTG
0491 TTTTCCGGTC TTTGTCTTTC TCTCTATCCC GCTGGTACAC AGGAGGGTTT CCCCCGACGT CAACACACCT
0561 CATTC
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