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PEC Original Annotations
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|
Essentiality
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Class
|
non-essential
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|
References (PMID)
|
J Bacteriol. 1998;180(7):1814-21.
Identification and function of the pdxY gene, which encodes a novel pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate biosynthesis in Escherichia coli K-12.
Yang Y, Tsui HC, Man TK, Winkler ME.
(
9537380
)
|
|
|
Related gene (MG1655 PEC)
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|
Gene Search
|
Search MG1655 PEC by gene name:
pdxY
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
pdxY
Search strains by all related name:
pdxY b1636 ECK1632 JW1628 ydgS
|
General information (Go to Linear View: )
|
|
Gene Name
|
pdxY
|
|
Alternative name
|
b1636,ECK1632,JW1628,ydgS
|
|
Location, Length
|
1,716,740 - 1,717,603
(
-
)
;
36.95
min
;
864
(bp) ,
287
(aa)
|
|
Product
|
pyridoxal kinase 2/pyridoxine kinase
|
|
Note
|
ECK1632:JW1628:b1636
|
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Function
|
|
|
PID
|
1742702
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
PDXY_ECOLI
(
P77150
)
|
|
- Protein name
|
RecName: Full=Pyridoxamine kinase; Short=PM kinase; EC=2.7.1.35;
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|
- Synonyms
|
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- Gene name
|
Name=pdxY; Synonyms=ydgS; OrderedLocusNames=b1636, JW1628;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
pyridoxal kinase 2/pyridoxine kinase [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MMKNILAIQS HVVYGHAGNS AAEFPMRRLG ANVWPLNTVQ FSNHTQYGKW TGCVMPPSHL TEIVQGIAAI
0071 DKLHTCDAVL SGYLGSAEQG EHILGIVRQV KAANPQAKYF CDPVMGHPEK GCIVAPGVAE FHVRHGLPAS
0141 DIIAPNLVEL EILCEHAVNN VEEAVLAARE LIAQGPQIVL VKHLARAGYS RDRFEMLLVT ADEAWHISRP
0211 LVDFGMRQPV GVGDVTSGLL LVKLLQGATL QEALEHVTAA VYEIMVTTKA MQEYELQVVA AQDRIAKPEH
0281 YFSATKL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgtcgcggta aaaagaatta ctgtctgatt
-070 tgctggaaat aatgcattaa gtggaaaggg ggagtgagaa atcactcccc ctggttttta tacagggaac
0001 atgatgaaaa atattctcgc tatccagtct cacgttgttt atggtcatgc gggtaacagt gcggcagagt
0071 ttccgatgcg ccgcctgggc gcgaacgtct ggccgctgaa caccgttcaa ttttctaatc acacccaata
0141 cggcaaatgg actggctgcg tgatgccgcc cagccattta accgaaattg tgcaaggcat tgccgccatt
0211 gataaattac acacctgtga tgccgtatta agtggctatc tgggatcggc ggagcagggt gaacatatcc
0281 tcggtatcgt ccgtcaggtg aaagccgcga atccgcaggc gaaatatttt tgcgatccgg taatgggtca
0351 tccggaaaaa ggctgtatcg ttgcaccggg tgtcgcagag tttcatgtgc ggcacggttt gcctgccagc
0421 gatatcattg cgccaaatct ggttgagctg gaaatactct gtgagcatgc ggtaaataac gtcgaagaag
0491 cggttctggc agcgcgcgaa ctcattgcgc aagggccaca aattgtgttg gttaaacacc tggcgcgagc
0561 tggctacagc cgtgaccgtt ttgaaatgct gctggtcacc gccgatgaag cctggcatat cagccgtccg
0631 ctggtggatt ttggtatgcg ccagccggta ggtgttggtg atgtgacgag cggtttactg ctggtgaaac
0701 tgcttcaggg ggcaacgctg caggaggcgc tggaacatgt gaccgctgca gtctacgaaa tcatggtgac
0771 caccaaagca atgcaggaat atgagctgca agtggtggct gctcaggatc gtattgccaa accagaacat
0841 tacttcagcg caacaaagct ctgaaatatc tcatttcggc ccacaacgac ctgtgggccg atggctatta
0911 ctttaagcct tccgctgaca gcgcgtcttg tacttccgga cgttcagcca tacg
|
