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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
intR
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
intR
Search strains by all related name:
intR b1345 ECK1342 JW1339 ydaP
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General information (Go to Linear View: )
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Gene Name
|
intR
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Alternative name
|
b1345,ECK1342,JW1339,ydaP
|
|
Location, Length
|
1,413,714 - 1,414,949
(
-
)
;
30.43
min
;
1236
(bp) ,
411
(aa)
|
|
Product
|
integrase
|
|
Note
|
ECK1342:JW1339:b1345; Rac prophage region
|
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Function
|
|
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PID
|
85674917
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
INTR_ECOLI
(
P76056
;
Q2MBE8
)
|
|
- Protein name
|
RecName: Full=Putative lambdoid prophage Rac integrase;
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- Synonyms
|
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- Gene name
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Name=intR; Synonyms=ydaP; OrderedLocusNames=b1345, JW1339;
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Homology Analysis
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BLAST
|
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Bacteria
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GTOP
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PDB
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PSI-BLAST
|
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SWISS-PROT
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BLAST
|
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PSI-BLAST
|
RecName: Full=Putative lambdoid prophage Qin defective integrase
|
|
nr
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BLAST
|
Rac prophage; integrase [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
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|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MSKLPTGVEI RGRYIRIWFM FRGKRCRETL KGWEITNSNI KKAGNLRALI VHEINSGEFE YLRRFPQSST
0071 GAKMVTTRVI KTFGELCDIW TKIKETELTT NTMKKTKSQL KTLRIIICES TPISHIRYSD ILNYRNELLH
0141 GETLYLDNPR SNKKGRTVRT VDNYIALLCS LLRFAYQSGF ISTKPFEGVK KLQRNRIKPD PLSKTEFNAL
0211 MESEKGQSQN LWKFAVYSGL RHGELAALAW EDVDLEKGIV NVRRNLTILD MFGPPKTNAG IRTVTLLQPA
0281 LEALKEQYKL TGHHRKSEIT FYHREYGRTE KQKLHFVFMP RVCNGKQKPY YSVSSLGARW NAAVKRAGIR
0351 RRNPYHTRHT FACWLLTAGA NPAFIASQMG HETAQMVYEI YGMWIDDMND EQIAMLNARL S
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cacttcaaac gagtatctcc tttaggtaag
-070 ccagacagca aacgagggat tatctggtac aactatccaa agataaatca gtttatcaaa gactcatgat
0001 atgtctaaat taccaacagg tgtcgagatt agaggtagat acattcgcat ctggttcatg tttcgaggaa
0071 aacgatgtcg ggaaacatta aaaggctggg agattacaaa cagtaatatt aaaaaggccg gaaatttaag
0141 agcgctgata gttcatgaaa taaactccgg tgaatttgag tatttaagac gttttcccca gtccagcact
0211 ggggcaaaaa tggtgacaac gagagtcata aaaacgttcg gagagctttg tgatatctgg acaaaaatta
0281 aagagacaga gttaacaaca aacacaatga agaaaacgaa atcacaatta aaaacactca gaataataat
0351 ttgtgaaagt accccgatat cacatattcg ttatagcgat atcttaaact accggaatga actgctgcat
0421 ggagaaacgc tttacctgga taatccaaga tccaacaaaa aaggaagaac cgtgcgcaca gttgataact
0491 atatcgccct gctctgttcg ctgttgcgtt ttgcgtatca gtcgggattt atatcaacca aaccatttga
0561 aggagtaaaa aaattacagc gaaacagaat aaagcctgat ccgttatcta aaacagaatt caatgcatta
0631 atggaaagtg aaaaaggaca gagccagaac ttgtggaaat ttgccgttta ctcaggactt cgtcacgggg
0701 aactggcagc tctggcgtgg gaggatgtgg atctcgaaaa gggaatagtg aatgtcagaa gaaacctgac
0771 gatacttgat atgttcggtc ccccaaaaac aaatgccggg atccgaacag taacactact gcagcctgct
0841 cttgaagcac tgaaggagca atacaaactg accgggcatc atcgcaaaag cgaaatcacc ttttatcatc
0911 gggagtacgg cagaaccgaa aagcaaaaac tgcattttgt tttcatgccc agggtgtgta acggaaaaca
0981 aaaaccttat tactcggtaa gcagtttggg ggcaaggtgg aatgcagcag taaaacgtgc tggtattcgc
1051 cgccgtaatc cgtaccatac gcggcatact tttgcctgct ggctgttgac ggcaggagcg aacccggcat
1121 ttatagccag ccaaatgggg catgaaactg cgcagatggt gtatgaaatt tacggtatgt ggattgatga
1191 catgaacgac gaacagatag ccatgttgaa tgcgcggtta tcgtagttgc aaagtttgcc cccaatttgc
1261 cccatttagt accagagaac tgaaataatg caagaaaatc aacaaattac aaagaaagaa caatacaacc
1331 tgaaca
|
