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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
hlpA
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Related strains
|
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Strains Search
|
Search strains by gene name:
hlpA
Search strains by all related name:
hlpA b0178 b0179 ECK0177 ECK0178 fir firA JW0173 JW0174 lpxD ompH omsA skp ssc
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General information (Go to Linear View: )
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Gene Name
|
hlpA
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Alternative name
|
b0178,b0179,ECK0177,ECK0178,fir,firA,JW0173,JW0174,lpxD,ompH,omsA,skp,ssc
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Location, Length
|
200,482 - 200,967
(
+
)
;
4.31
min
;
486
(bp) ,
161
(aa)
|
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Product
|
periplasmic chaperone
|
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Note
|
ECK0177:JW0173:b0178
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Function
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PID
|
4902919
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
SKP_ECOLI
(
P0AEU7
;
P11457
)
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- Protein name
|
RecName: Full=Chaperone protein skp; AltName: Full=Seventeen kilodalton protein; AltName: Full=Histone-like protein HLP-1; AltName: Full=DNA-binding 17 kDa protein; Flags: Precursor;
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- Synonyms
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- Gene name
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Name=skp; Synonyms=hlpA, ompH; OrderedLocusNames=b0178, JW0173;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
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periplasmic chaperone [Escherichia coli O157:H7 EDL933]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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| Sequences |
Amino acid
FASTA format
|
0001 MKKWLLAAGL GLALATSAQA ADKIAIVNMG SLFQQVAQKT GVSNTLENEF KGRASELQRM ETDLQAKMKK
0071 LQSMKAGSDR TKLEKDVMAQ RQTFAQKAQA FEQDRARRSN EERGKLVTRI QTAVKSVANS QDIDLVVDAN
0141 AVAYNSSDVK DITADVLKQV K
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGTGGTAGTG TAGCGATGAC TTTAGGCGAT
-070 CAATATAAGA TCGCCGGGCC ACGCAAAGAA CTGCACCCTC CGGTGCAAAT GGGATGGTAA GGAGTTTATT
0001 gtgaaaaagt ggttattagc tgcaggtctc ggtttagcac tggcaacttc tgctcaggcg gctgacaaaa
0071 ttgcaatcgt caacatgggc agcctgttcc agcaggtagc gcagaaaacc ggtgtttcta acacgctgga
0141 aaatgagttc aaaggccgtg ccagcgaact gcagcgtatg gaaaccgatc tgcaggctaa aatgaaaaag
0211 ctgcagtcca tgaaagcggg cagcgatcgc actaagctgg aaaaagacgt gatggctcag cgccagactt
0281 ttgctcagaa agcgcaggct tttgagcagg atcgcgcacg tcgttccaac gaagaacgcg gcaaactggt
0351 tactcgtatc cagactgctg tgaaatccgt tgccaacagc caggatatcg atctggttgt tgatgcaaac
0421 gccgttgctt acaacagcag cgatgtaaaa gacatcactg ccgacgtact gaaacaggtt aaataaGTAA
0491 TGCCTTCAAT TCGACTGGCT GATTTAGCGC AGCAGTTGGA TGCAGAACTA CACGGTGATG GCGATATCGT
0561 CATCACCGGC GTTGCGTCCA TGCAAT
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