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PEC Original Annotations
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|
Essentiality
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Class
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non-essential
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References (PMID)
|
J Basic Microbiol. 1995;35(4):217-27.
The fix Escherichia coli region contains four genes related to carnitine metabolism.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA.
(
7473063
)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
fixC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
fixC
Search strains by all related name:
fixC b0043 ECK0044 JW0042 yaaS
|
General information (Go to Linear View: )
|
|
Gene Name
|
fixC
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|
Alternative name
|
b0043,ECK0044,JW0042,yaaS
|
|
Location, Length
|
44,180 - 45,466
(
+
)
;
0.95
min
;
1287
(bp) ,
428
(aa)
|
|
Product
|
predicted oxidoreductase, FAD/NAD(P)-binding domain
|
|
Note
|
ECK0044:JW0042:b0043
|
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Function
|
|
|
PID
|
85674298
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
FIXC_ECOLI
(
P68644
;
P31575; P75626
)
|
|
- Protein name
|
RecName: Full=Protein fixC;
|
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- Synonyms
|
|
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- Gene name
|
Name=fixC; Synonyms=yaaS; OrderedLocusNames=b0043, JW0042;
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Homology Analysis
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BLAST
|
|
Bacteria
|
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GTOP
|
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PDB
|
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PSI-BLAST
|
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|
SWISS-PROT
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|
BLAST
|
RecName: Full=Protein fixC
|
|
PSI-BLAST
|
RecName: Full=Protein fixC
|
|
nr
|
|
BLAST
|
predicted oxidoreductase with FAD/NAD
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MSEDIFDAII VGAGLAGSVA ALVLAREGAQ VLVIERGNSA GAKNVTGGRL YAHSLEHIIP GFADSAPVER
0071 LITHEKLAFM TEKSAMTMDY CNGDETSPSQ RSYSVLRSKF DAWLMEQAEE AGAQLITGIR VDNLVQRDGK
0141 VVGVEADGDV IEAKTVILAD GVNSILAEKL GMAKRVKPTD VAVGVKELIE LPKSVIEDRF QLQGNQGAAC
0211 LFAGSPTDGL MGGGFLYTNE NTLSLGLVCG LHHLHDAKKS VPQMLEDFKQ HPAVAPLIAG GKLVEYSAHV
0281 VPEAGINMLP ELVGDGVLIA GDAAGMCMNL GFTIRGMDLA IAAGEAAAKT VLSAMKSDDF SKQKLAEYRQ
0351 HLESGPLRDM RMYQKLPAFL DNPRMFSGYP ELAVGVARDL FTIDGSAPEL MRKKILRHGK KVGFINLIKD
0421 GMKGVTVL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCGACGCCGT GAAGATCCTT CCGGCGCTGA
-070 CCGCAGCTTT AGCGCGTTGA TCCACTCTGG CAGGGCTGCA TTTTGGCCCT GCCGCTGACA GGGAGCTCTT
0001 atgtccgaag atatctttga cgccatcatc gtcggtgcag ggcttgccgg ttcggttgcc gcactggtgc
0071 tcgcccgcga aggtgcgcaa gtgttagtta tcgagcgtgg caattccgca ggtgccaaga acgtcaccgg
0141 cgggcgtctc tatgcccaca gtctggaaca cattattcct ggtttcgccg actccgcccc cgtagaacgc
0211 ctgatcaccc atgaaaaact cgcgtttatg acggaaaagt cagcgatgac tatggactac tgcaatggtg
0281 acgaaacctc gccatcccag cgttcttact ccgttttgcg cagtaaattt gatgcctggc tgatggagca
0351 ggccgaagaa gcgggcgcgc agttaattac cgggatccgc gtcgataacc tcgtacagcg cgatggcaaa
0421 gtcgtcggtg tagaagccga tggcgatgtg attgaagcga aaacggtgat ccttgctgat ggggtgaact
0491 ccatccttgc cgaaaaattg gggatggcaa aacgcgtcaa accgacggat gtggcggttg gcgtgaagga
0561 actgatcgag ttaccgaagt cggttattga agaccgtttt cagttgcagg gtaatcaggg ggcggcttgc
0631 ctgtttgcgg gatcacccac cgatggcctg atgggcggcg gcttccttta taccaatgaa aacaccctgt
0701 cgctggggct ggtttgtggt ttgcatcatc tgcatgacgc gaaaaaatcg gtgccgcaaa tgctggaaga
0771 tttcaaacag catccggccg ttgcaccgct gatcgcgggc ggcaagctgg tggaatattc cgctcacgta
0841 gtgccggaag caggcatcaa catgctgccg gagttggttg gtgacggcgt attgattgcc ggtgatgccg
0911 ccggaatgtg tatgaacctc ggttttacca ttcgcggtat ggatctggcg attgccgccg gggaagccgc
0981 agcaaaaacc gtgctttcag cgatgaaaag cgacgatttc agtaagcaaa aactggcgga atatcgtcag
1051 catcttgaga gtggtccgct gcgcgatatg cgtatgtacc agaaactacc ggcgttcctt gataacccac
1121 gcatgtttag cggctacccg gagctggcgg tgggtgtggc gcgtgacctg ttcaccattg atggcagcgc
1191 gccggaactg atgcgcaaga aaatcctccg ccacggcaag aaagtgggct tcatcaatct aatcaaggat
1261 ggcatgaaag gagtgaccgt tttatgaCTT CTCCCGTCAA TGTGGACGTC AAACTGGGCG TCAATAAATT
1331 CAATGTCGAT GAAGAGCATC CGCACATTGT TGTGAAGGCC GATGCTGATA AACAGGC
|
