|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
damX
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
damX
Search strains by all related name:
damX b3388 ECK3375 JW3351 yhfB
|
General information (Go to Linear View: )
|
|
Gene Name
|
damX
|
|
Alternative name
|
b3388,ECK3375,JW3351,yhfB
|
|
Location, Length
|
4,123,110 - 4,124,396
(
+
)
;
88.74
min
;
1287
(bp) ,
428
(aa)
|
|
Product
|
hypothetical protein
|
|
Note
|
ECK3375:JW3351:b3388
|
|
Function
|
|
|
PID
|
85676653
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
DAMX_ECOLI
(
P11557
;
P76687; Q2M753
)
|
|
- Protein name
|
RecName: Full=Protein damX;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=damX; Synonyms=yhfB; OrderedLocusNames=b3388, JW3351;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
predicted protein [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MDEFKPEDEL KPDPSDRRTG RSRQSSERSE RTERGEPQIN FDDIELDDTD DRRPTRAQKE RNEEPEIEEE
0071 IDESEDETVD EERVERRPRK RKKAASKPAS RQYMMMGVGI LVLLLLIIGI GSALKAPSTT SSDQTASGEK
0141 SIDLAGNATD QANGVQPAPG TTSAENTQQD VSLPPISSTP TQGQTPVATD GQQRVEVQGD LNNALTQPQN
0211 QQQLNNVAVN STLPTEPATV APVRNGNASR DTAKTQTAER PSTTRPARQQ AVIEPKKPQA TVKTEPKPVA
0281 QTPKRTEPAA PVASTKAPAA TSTPAPKETA TTAPVQTASP AQTTATPAAG AKTAGNVGSL KSAPSSHYTL
0351 QLSSSSNYDN LNGWAKKENL KNYVVYETTR NGQPWYVLVS GVYASKEEAK KAVSTLPADV QAKNPWAKPL
0421 RQVQADLK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCAGCGTAAC AACAAGAAAG GTCAGGCCGC
-070 TTATCAAGCG GTCTATTAGC TTCAGGTTAA TTGCAACGTG GTAAGCATTA ACCTTTTAGT GGGGTGTTAA
0001 atggatgaat tcaaaccaga agacgagctg aaacccgatc ccagcgatcg tcgtactggt cgttctcgtc
0071 aatcttctga acgttctgag cgtactgaac gtggcgaacc gcagatcaat tttgatgata ttgaacttga
0141 tgacactgac gatcgccgtc cgactcgtgc gcaaaaagag cgcaatgagg aaccggaaat cgaagaagaa
0211 attgacgaat ccgaagatga aaccgtggat gaagagcgcg tagagcgtcg tccgcgtaag cgcaaaaaag
0281 cagccagtaa acccgcttct cgtcagtata tgatgatggg cgtcggcatt ctggttctac tgctgttgat
0351 catcggtatc ggttctgcgc taaaagcccc ctcgaccact tccagcgatc aaaccgcgtc tggcgagaag
0421 agtattgatc ttgctggcaa tgcgaccgat caggcgaatg gcgtgcagcc agcgccggga accacgtctg
0491 cggaaaatac tcagcaggat gtttctctgc caccgatctc ttctacgccg actcaagggc aaaccccggt
0561 ggcaacggat ggtcaacaac gtgttgaagt gcagggtgac ctgaacaatg cgctgaccca gccacaaaat
0631 cagcaacagc tgaacaatgt ggcggtcaat tccacgttgc cgactgaacc cgcaacggtt gcgcctgttc
0701 gcaatggcaa tgcatcgcgt gacacggcga aaacgcaaac cgctgaacgt ccgtccacta cgcgcccagc
0771 tcgtcagcag gcggtgattg aaccgaaaaa accgcaagca accgtgaaaa cggagccgaa gccggtagca
0841 cagacgccga agcgtactga accagctgcc cctgtggcga gcacgaaggc accggctgcg acttctacgc
0911 cagcaccaaa agagacggcg actacggctc cagtacagac ggcatccccg gcgcaaacca cagcaacacc
0981 cgctgctggg gcgaagaccg caggtaatgt tggttcgttg aaatcggcac cgtccagcca ttacactctg
1051 cagctgagca gttcctctaa ctacgacaac ctgaacggtt gggcgaagaa agagaatctg aaaaactacg
1121 ttgtctatga aacgacgcgt aatggtcagc cgtggtatgt cctggtttct ggcgtgtacg cttcgaaaga
1191 agaggcgaaa aaagcggtat ctacattgcc agcagatgtc caggccaaaa acccgtgggc gaaaccgctg
1261 cgtcaggtac aggccgatct gaagtaaTCA AGGTTATCTC CCGCAATGGT TTATCGTTGC GGGAGTTGCC
1331 TGAAGCGCTG GATGCTGTCG GAGCTTTCTC CACAGCCGGA GAAGGTGTAA TTAGTTA
|
