|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
caiF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
caiF
Search strains by all related name:
caiF b0034 ECK0035 JW0033
|
General information (Go to Linear View: )
|
|
Gene Name
|
caiF
|
|
Alternative name
|
b0034,ECK0035,JW0033
|
|
Location, Length
|
34,300 - 34,695
(
+
)
;
0.74
min
;
396
(bp) ,
131
(aa)
|
|
Product
|
DNA-binding transcriptional activator
|
|
Note
|
ECK0035:JW0033:b0034
|
|
Function
|
|
|
PID
|
85674291
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
CAIF_ECOLI
(
P0AE58
;
P75622; Q2MCH0; Q47081
)
|
|
- Protein name
|
RecName: Full=Transcriptional activatory protein caiF;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=caiF; OrderedLocusNames=b0034, JW0033;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
RecName: Full=Transcriptional activatory protein caiF
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
conserved hypothetical protein [Escherichia sp. 1_1_43]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MCEGYVEKPL YLLIAEWMMA ENRWVIAREI SIHFDIEHSK AVNTLTYILS EVTEISCEVK MIPNKLEGRG
0071 CQCQRLVKVV DIDEQIYARL RNNSREKLVG VRKTPRIPAV PLTELNREQK WQMMLSKSMR R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTTGCATACT ATCGATATAT CCACAATTTT
-070 AATATGGCCT TGTTTAATTG CTTCAAAACG AGTCATAGCC AGACTTTTAA TTTGTGAAAC TGGAGTTCGT
0001 atgtgtgaag gatatgttga aaaaccactc tacttgttaa tcgccgaatg gatgatggct gaaaatcggt
0071 gggtgatagc aagagagatc tctattcatt tcgatattga acacagcaag gcggttaata ccctgactta
0141 tattctgtcg gaagtcacag aaataagctg cgaagttaag atgatcccta ataagctgga agggcgggga
0211 tgccagtgtc agcgactggt taaagtggtc gatatcgatg agcaaattta cgcgcgcctg cgcaataaca
0281 gtcgggaaaa attagtcggt gtaagaaaga cgccgcgtat tcctgccgtt ccgctcacgg aacttaaccg
0351 cgagcagaag tggcagatga tgttgtcaaa gagtatgcgt cgttaaTTTT ATCTCGTTGA TACCGGGCGT
0421 CCTGCTTGCC AGATGCGATG TTGTAGCATC TTATCCAGCA ACCAGGTCGC ATCCGGCAAG ATCACCGTTT
0491 AGGCGT
|
