MG1655
W3110
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Gene Report : betA
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
Related gene (MG1655 PEC)
     Gene Search Search MG1655 PEC by gene name:  betA
Related strains
     Strains Search Search strains by gene name:  betA   Search strains by all related name:  betA b0311 ECK0309 JW0303

General information  (Go to Linear View:)
 Gene Name betA  
 Alternative name b0311,ECK0309,JW0303  
 Location, Length 324,801 - 326,471 (  -  ) ;   6.99 min ; 1671 (bp) ,   556 (aa) Go to Linear View
 Product choline dehydrogenase, a flavoprotein  
 Note ECK0309:JW0303:b0311  
 Function  
 PID 85674454  
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) BETA_ECOLI ( P17444 ; P77861; Q2MCB2 )
    -  Protein name RecName: Full=Choline dehydrogenase; Short=CHD; Short=CDH; EC=1.1.99.1;  
    -  Synonyms  
    -  Gene name Name=betA; OrderedLocusNames=b0311, JW0303;  

 Linear View
View Location
   315.0  –  340.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP  
    PDB
         PSI-BLAST  
    SWISS-PROT
        BLAST  
        PSI-BLAST
    nr
         BLAST choline dehydrogenase, a flavoprotein [Escherichia coli str. K-12 substr. MG1655]  
Pfam 27.0   (database updated : 2013-03 )
    Pfam

Other Cross-Reference
    EcoCyc betA 

MMBR References
Gene. 1991;103(1):45-52.
Characterization of an Escherichia coli gene encoding betaine aldehyde dehydrogenase (BADH): structural similarity to mammalian ALDHs and a plant BADH.
Boyd LA, Adam L, Pelcher LE, McHughen A, Hirji R, Selvaraj G. ( 1879697 )

Sequences
Amino acid
FASTA format
0001 MQFDYIIIGA GSAGNVLATR LTEDPNTSVL LLEAGGPDYR FDFRTQMPAA LAFPLQGKRY NWAYETEPEP 
0071 FMNNRRMECG RGKGLGGSSL INGMCYIRGN ALDLDNWAQE PGLENWSYLD CLPYYRKAET RDMGENDYHG 
0141 GDGPVSVTTS KPGVNPLFEA MIEAGVQAGY PRTDDLNGYQ QEGFGPMDRT VTPQGRRAST ARGYLDQAKS 
0211 RPNLTIRTHA MTDHIIFDGK RAVGVEWLEG DSTIPTRATA NKEVLLCAGA IASPQILQRS GVGNAELLAE 
0281 FDIPLVHELP GVGENLQDHL EMYLQYECKE PVSLYPALQW WNQPKIGAEW LFGGTGVGAS NHFEAGGFIR 
0351 SREEFAWPNI QYHFLPVAIN YNGSNAVKEH GFQCHVGSMR SPSRGHVRIK SRDPHQHPAI LFNYMSHEQD 
0421 WQEFRDAIRI TREIMHQPAL DQYRGREISP GVECQTDEQL DEFVRNHAET AFHPCGTCKM GYDEMSVVDG 
0491 EGRVHGLEGL RVVDASIMPQ IITGNLNATT IMIGEKIADM IRGQEALPRS TAGYFVANGM PVRAKK

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             cgcgagaacg gcgtgatgac gctccagagt 
-070 tacacccagg tgaagtccat ccaggttgag atggctaaat tccagtccat attctaacca ggaggtttat 
0001 ttgcaatttg actacatcat tattggtgcc ggctcagccg gcaacgttct cgctacccgt ctgactgaag 
0071 atccgaatac ctccgtgctg ctgcttgaag cgggcggccc ggactatcgc tttgacttcc gcacccagat 
0141 gcccgctgcc ctggcattcc cgctacaggg taaacgctac aactgggcct atgaaacgga acctgaaccg 
0211 tttatgaata accgccgcat ggagtgcgga cgcggtaaag gtctgggtgg atcgtcgctg atcaacggca 
0281 tgtgctacat ccgtggcaat gcgctggatc tcgataactg ggcgcaagaa cccggtctgg agaactggag 
0351 ctacctcgac tgcctgccct actaccgcaa ggccgagact cgcgatatgg gtgaaaacga ctatcacggc 
0421 ggtgatggcc cggtgagcgt cactacctcc aaacccggcg tcaatccgct gtttgaagcg atgattgaag 
0491 cgggcgtgca ggcgggctac ccgcgcacgg acgatctcaa cggttatcag caggaaggtt ttggtccgat 
0561 ggatcgcacc gtcacgccgc agggccgtcg cgccagcacc gcgcgtggct atctcgatca ggccaaatcg 
0631 cgtcctaacc tgaccattcg tactcacgct atgaccgatc acatcatttt tgacggcaaa cgcgcggtgg 
0701 gcgtcgaatg gctggaaggc gacagcacca tcccaacccg cgcaacggcc aacaaagaag tgctgttatg 
0771 tgcaggcgcg attgcctcac cgcagatcct gcaacgctcc ggcgtcggca acgctgaact gctggcggag 
0841 tttgatattc cgctggtgca tgaattaccc ggcgtcggcg aaaatcttca ggatcatctg gagatgtatc 
0911 tgcaatatga gtgcaaagaa ccggtttccc tctaccctgc cctgcagtgg tggaaccagc cgaaaatcgg 
0981 tgcggagtgg ctgtttggcg gcactggcgt tggtgccagc aaccactttg aagcaggtgg atttattcgc 
1051 agccgtgagg aatttgcgtg gccgaatatt cagtaccatt tcctgccagt agcgattaac tataacggct 
1121 cgaatgcagt gaaagagcac ggtttccagt gccacgtcgg ctcaatgcgc tcgccaagcc gtgggcatgt 
1191 gcggattaaa tcccgcgacc cgcaccagca tccggcgatt ctgtttaact acatgtcgca cgagcaggac 
1261 tggcaggagt tccgcgacgc aattcgcatc acccgcgaga tcatgcatca acccgcgctg gatcagtatc 
1331 gtggccgcga aatcagcccc ggtgtcgaat gccagacgga tgaacagctc gatgagttcg tgcgtaacca 
1401 cgccgaaacc gccttccatc cgtgcggtac ctgcaaaatg ggttacgacg agatgtccgt ggttgacggc 
1471 gaaggccgcg tacacgggtt agaaggcctg cgtgtggtgg atgcgtcgat tatgccgcag attatcaccg 
1541 ggaatttgaa cgccacgaca attatgattg gcgagaaaat agcggatatg attcgtggac aggaagcgct 
1611 gccgaggagc acggcgggat attttgtggc aaatgggatg ccggtgagag cgaaaaaatg agtcgtgatg 
1681 tgaactaacg caggaaccga tcagattgag agttaccgtt ccagagaggg ggaccgaatc cttatataaa 
1751 cactgaggta actctcatgc t