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PEC Original Annotations
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|
Essentiality
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Class
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non-essential
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|
References (PMID)
|
J Bacteriol. 1989;171(6):3053-9.
Genetic reconstitution of the high-affinity L-arabinose transport system.
Horazdovsky BF, Hogg RW.
(
2656640
)
|
|
|
Related gene (MG1655 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
araH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
araH
Search strains by all related name:
araH b1898 b1899 b4460 ECK1897 JW1887
|
General information (Go to Linear View: )
|
|
Gene Name
|
araH
|
|
Alternative name
|
b1898,b1899,b4460,ECK1897,JW1887
|
|
Location, Length
|
1,984,691 - 1,985,680
(
-
)
;
42.72
min
;
990
(bp) ,
329
(aa)
|
|
Product
|
fused L-arabinose transporter subunits and membrane components of ABC superfamily
|
|
Note
|
ECK1897:JW1887:b4460
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Function
|
|
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PID
|
1736557
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
ARAH_ECOLI
(
P0AE26
;
P08532; P76304; P76305
)
|
|
- Protein name
|
RecName: Full=L-arabinose transport system permease protein araH;
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- Synonyms
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- Gene name
|
Name=araH; OrderedLocusNames=b4460, JW1887;
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Homology Analysis
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BLAST
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|
Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
L-arabinose transporter permease protein [Shigella flexneri 2a str. 301]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MMSSVSTSGS GAPKSSFSFG RIWDQYGMLV VFAVLFIACA IFVPNFATFI NMKGLGLAIS MSGMVACGML
0071 FCLASGDFDL SVASVIACAG VTTAVVINLT ESLWIGVAAG LLLGVLCGLV NGFVIAKLKI NALITTLATM
0141 QIVRGLAYII SDGKAVGIED ESFFALGYAN WFGLPAPIWL TVACLIIFGL LLNKTTFGRN TLAIGGNEEA
0211 ARLAGVPVVR TKIIIFVLSG LVSAIAGIIL ASRMTSGQPM TSIGYELIVI SACVLGGVSL KGGIGKISYV
0281 VAGILILGTV ENAMNLLNIS PFAQYVVRGL ILLAAVIFDR YKQKAKRTV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaatcgccgg tgaattgtta cacgagcagg
-070 cagatgagcg tcaggcactg agccttgcga tgcctaaagt cagccaggct gttgcctgag taaggagagt
0001 atgatgtctt ctgtttctac atcggggtct ggcgcaccta agtcgtcatt cagcttcggg cgtatctggg
0071 atcagtacgg catgctggtg gtgtttgcgg tgctctttat cgcctgtgcc atttttgtcc caaattttgc
0141 caccttcatt aatatgaaag ggttgggcct ggcaatttcc atgtcgggga tggtggcttg tggcatgttg
0211 ttctgcctcg cttccggtga ctttgacctt tctgtcgcct ccgtaattgc ctgtgcgggt gtcaccacgg
0281 cggtggttat taacctgact gaaagcctgt ggattggcgt ggcagcgggg ttgttgctgg gcgttctctg
0351 tggcctggtc aatggctttg ttatcgccaa actgaaaata aatgctctga tcacgacatt ggcaacgatg
0421 cagattgttc gaggtctggc gtacatcatt tcagacggta aagcggtcgg tatcgaagat gaaagcttct
0491 ttgcccttgg ttacgccaac tggttcggtc tgcctgcgcc aatctggctc accgtcgcgt gtctgattat
0561 ctttggtttg ctgctgaata aaaccacctt tggtcgtaac accctggcga ttggcgggaa cgaagaggcc
0631 gcgcgtctgg cgggtgtacc ggttgttcgc accaaaatta ttatctttgt tctctcaggc ctggtatcag
0701 cgatagccgg aattattctg gcttcacgta tgaccagtgg gcagccaatg acgtcgattg gttatgagct
0771 gattgttatc tccgcctgcg ttttaggtgg cgtttctctg aaaggtggca tcggaaaaat ctcatatgtg
0841 gtggcgggta tcttaatttt aggcaccgtg gaaaacgcca tgaacctgct taatatttct cctttcgcgc
0911 agtacgtggt tcgcggctta atcctgctgg cagcggtgat cttcgaccgt tacaagcaaa aagcgaaacg
0981 cactgtctga tgcttttttc tgcaacaatt tagcgttttt tcccaccata gccaaccgcc ataacggttg
1051 gctgttcttc gttgcaaatg gcgacccccg tcacactgtc
|
