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PEC Original Annotations
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Essentiality
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Class
|
non-essential
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References (PMID)
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|
|
Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
aspV
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Related strains
|
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Strains Search
|
Search strains by gene name:
aspV
Search strains by all related name:
aspV b0216 ECK0216 JWR0007
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General information (Go to Linear View: )
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|
tRNA Name
|
aspV
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Alternative name
|
b0216,ECK0216,JWR0007
|
|
Location, Length
|
236,931 - 237,007
(
+
)
;
5.10
min
;
77
(bp) ,
|
|
Product
|
tRNA-Asp
|
|
Note
|
codon recognized: GAC; Aspartate tRNA1; ECK0216:JWR0007:b0216
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Function
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|
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PID
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
|
|
|
nr
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BLAST
|
conserved hypothetical protein [Escherichia coli APEC O1]
|
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
|
|
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MMBR References
|
In D. Soll, J. Abelson, and P. Schimmel (ed.),Transfer RNA: biological aspects. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. 1980:341-362
Genetics of nonsense suppressor tRNAs in Escherichia coli.
Ozeki, H., H. Inokuchi, F. Yamao, M. Kodaira, H. Sakano, T. Ikemura, and Y. Shimura.
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| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGGCGATTTT TGCAGCAAAC GATTCAAAAG
-070 ATGAGAAAAA CCGTTGACGA AGGTCGAGGC AATCCGTAAT ATTCGCCTCG TTCCCAACGG AACACAACGC
0001 ggagcggtag ttcagtcggt tagaatacct gcctgtcacg cagggggtcg cgggttcgag tcccgtccgt
0071 tccgccaCTA TTCACTCATG AAAATGAGTT CAGAGAGCCG CAAGATTTTT AATTTTGCGG TTTTTTTGTA
0141 TTTGAATTCC ACCATTTCTC TGTTCAATGA TTTTACT
|
