|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybeM
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybeM
Search strains by all related name:
ybeM b0625 b0626 b4581 ECK0618 ECK0619 JW0620 JW0621 ybeH
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybeM
|
|
Alternative name
|
b0625,b0626,b4581,ECK0618,ECK0619,JW0620,JW0621,ybeH
|
|
Location, Length
|
658,677 - 659,240
(
+
)
;
14.18
min
;
564
(bp) ,
187
(aa)
|
|
Product
|
predicted C-N hydrolase superfamily,NAD(P)-binding amidase/nitrilase
|
|
Note
|
ECK0619:JW0621:b0626
|
|
Function
|
|
|
PID
|
4062249
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YBEM_ECOLI
(
P39874
;
P77104; P77192
)
|
|
- Protein name
|
RecName: Full=Putative UPF0012 hydrolase ybeM; EC=3.5.-.-;
|
|
- Synonyms
|
|
|
- Gene name
|
ORFNames=b0625, b0626;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
putative amidase [Shigella sonnei Ss046]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MMTTILTIHV PSTPGRAWNM LVALQAGNIV ARYAKLHLYD AFAIQESRRV DAGNEIAPLL EVEGMKVGLM
0071 TCYDLRFPEL ALAQALQGAE ILVLPAAWVR GPLKEHHWST LLAARALDTT CYMVAAGECG NKNIGQSRII
0141 DPFGVTIAAA SEMPALIMAE VTPERVRQVR AQLPVLNNRR FAPPQLL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGCTGGCGCG CGATGATCAT GATGCAGATC
-070 TATCGGTTAA ATCAGCACAG CTGCTGGAAG GCGAATTCCT CGGACTTTAC GGCGAGAAAG TAAACGTAAC
0001 atgatgacga caattctgac gattcatgtt ccttcaacgc cggggcgcgc atggaatatg ctggtggcac
0071 ttcaggcagg aaacatcgtc gcccgttatg ccaaactgca tctctatgat gcatttgcca ttcaggaatc
0141 acgccgtgtt gatgctggta atgaaatcgc tccgttactg gaggtggaag ggatgaaggt cggtctgatg
0211 acctgttatg acttacgctt tccagagctg gcgctggcac aggcattaca gggagctgaa atcctggtac
0281 ttcctgccgc ctgggttcgc gggccgctca aagagcatca ctggtcaacg ttgcttgccg ctcgtgcgct
0351 ggataccacc tgttatatgg tggcggcggg ggagtgcggg aacaaaaata tcggtcaaag ccggattata
0421 gatccctttg gcgtcaccat tgcggcagcg tcagaaatgc ctgcactcat tatggcggaa gtgacgcccg
0491 aacgtgtgcg tcaggtgcgc gcgcaactgc ccgtcttaaa caaccgtcgc tttgcgccgc cgcaattatt
0561 atgaTGTTTT TTTACTCGGC GCTTGATTCA CCTTGTTACA GATTGCTATT GTGTGCGCGC GTCGAATGAC
0631 CGTTAATATT CTCTGGTTTT TAAGGCGCGT TCTG
|
