MG1655
W3110
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Gene Report : secD
PEC Original Annotations
Essentiality
     Class essential
     References (PMID)  
Related gene (MG1655 PEC)
     Gene Search Search MG1655 PEC by gene name:  secD
Related strains
     Strains Search Search strains by gene name:  secD   Search strains by all related name:  secD b0408 ECK0402 JW0398

General information  (Go to Linear View:)
 Gene Name secD  
 Alternative name b0408,ECK0402,JW0398  
 Location, Length 426,871 - 428,718 (  +  ) ;   9.19 min ; 1848 (bp) ,   615 (aa) Go to Linear View
 Product SecYEG protein translocase auxillary subunit  
 Note ECK0402:JW0398:b0408  
 Function  
 PID 85674548  
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) SECD_ECOLI ( P0AG90 ; P19673; P72348; P77531; Q2MC18 )
    -  Protein name RecName: Full=Protein-export membrane protein secD;  
    -  Synonyms  
    -  Gene name Name=secD; OrderedLocusNames=b0408, JW0398;  

 Linear View
View Location
   415.0  –  440.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP  
    PDB
        PSI-BLAST  
    SWISS-PROT
         BLAST RecName: Full=Protein-export membrane protein secD  
        PSI-BLAST
    nr
         BLAST preprotein translocase subunit SecD [Escherichia coli O157:H7 EDL933]  
Pfam 27.0   (database updated : 2013-03 )
    Pfam

Other Cross-Reference
    EcoCyc secD 

MMBR References
J Bacteriol. 1995;177:4969-4973
Multicopy suppression of cold-sensitive sec mutations in Escherichia coli.
Danese, P. N., C. K. Murphy, and T. J. Silhavy.

Sequences
Amino acid
FASTA format
0001 MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL IQVQKTLQEE KITAKSVALE 
0071 EGAILARFDS TDTQLRAREA LMGVMGDKYV VALNLAPATP RWLAAIHAEP MKLGLDLRGG VHFLMEVDMD 
0141 TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF RDAKARDEAI AYLSKRHPDL VISSQGSNQL 
0211 RAVMSDARLS EAREYAVQQN INILRNRVNQ LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE 
0281 FRLVNTNVDQ AAAASGRVPG DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG 
0351 NIMSNFTKDN IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG INNPNEARQL 
0421 SLLLRAGALI APIQIVEERT IGPTLGMQNI EQGLEACLAG LLVSILFMII FYKKFGLIAT SALIANLILI 
0491 VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ AIDEGYRGAF SSIFDANITT 
0561 LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI VNLLYGGKRV KKLSI

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             CACCACTGAA GTAGTTATTA AACGTGACTT 
-070 CGTAGCTGCC GTCCTGCCGA AAGGCACCAT GAAGGCGCTG TAATTAAAAT TTTTCCCTAA GGGAATTGCC 
0001 gtgttaaacc gttatccttt gtggaagtac gtcatgctga tcgtggtgat tgtcatcggt ctgctgtatg 
0071 cgcttcccaa cctgtttggt gaggatccgg ctgttcagat cactggtgcg cgcggagtcg ccgccagtga 
0141 gcaaacgctg atccaggtcc agaaaacgtt acaagaagaa aaaataactg ctaagtctgt ggcactggaa 
0211 gagggcgcta ttcttgcgcg cttcgactcc actgacaccc agttgcgcgc tcgtgaagca ttaatgggcg 
0281 ttatgggtga caaatacgtc gtggcgctta accttgcccc ggcaacgccg cgctggctgg cagctattca 
0351 cgctgagccg atgaagctcg gccttgacct gcgtggcggc gttcacttcc tgatggaagt ggatatggac 
0421 accgcgcttg gcaaactcca ggaacaaaat atcgatagcc tacgcagtga cctgcgcgaa aagggcatcc 
0491 cgtataccac tgttcgtaaa gaaaacaact acggcctgag catcactttc cgcgatgcta aagctcgtga 
0561 tgaagccatt gcgtatctga gcaagcgcca tccggacctg gtgattagca gccagggcag caaccagctg 
0631 cgtgcggtaa tgagcgatgc tcgtctgagt gaagcgcgtg aatatgcggt gcagcagaac attaatatcc 
0701 tgcgtaaccg tgtaaaccaa cttggcgtgg cggagccggt ggttcagcgt cagggtgctg accgtatcgt 
0771 tgttgaactg ccaggtattc aggacactgc gcgtgcgaaa gagattctgg gtgcgacggc aacgctggaa 
0841 ttccgtctgg taaacaccaa cgttgaccag gccgctgcgg catccggtcg cgtaccgggc gactctgaag 
0911 tgaaacagac ccgcgaaggt cagccagttg tgctgtacaa acgcgtaatt ctgaccggtg accatatcac 
0981 cgactccact tccagccagg acgaatacaa ccaaccgcag gttaacatct cgctcgatag cgctggtggt 
1051 aacatcatgt ctaacttcac taaggacaac atcggcaaac cgatggcaac cctgtttgtg gagtacaaag 
1121 acagcggtaa gaaagatgca aatggtcgtg cggttctggt gaaacaggaa gaggtgatta acatcgccaa 
1191 catccagtct cgtctgggta acagcttccg tatcaccggc atcaacaacc cgaacgaagc ccgtcagctg 
1261 tcactgctgc tgcgtgccgg tgcgttgatc gcgccgattc agattgttga agaacgtacc attggcccaa 
1331 ccctgggtat gcagaacatt gaacaggggc tggaggcttg ccttgccggt ctgctggttt ctattctgtt 
1401 catgatcatc ttctataaga agtttggtct gattgcgacc agtgctctga ttgccaactt gatcttaatc 
1471 gtcggcatta tgtcgctgtt gccaggcgca acgctgagta tgccaggtat cgcgggtatc gtcttaaccc 
1541 ttgcggtggc ggtcgatgcg aacgtactga tcaacgaacg tattaaagaa gagttgagca acggacgtac 
1611 tgttcaacag gcaattgatg aaggttatcg tggcgcattc agttctatct tcgatgcgaa catcaccacg 
1681 ctgattaaag tcatcatcct gtacgcagtg ggtaccgggg caattaaagg gttcgcgatt actaccggta 
1751 tcggtgtggc gacgtcgatg tttaccgcga ttgtcggtac gcgtgccatc gtaaacctgc tatatggcgg 
1821 caagcgcgtc aagaagctgt caatctgaGG AGTGCGATGT GGCACAGGAA TATACTGTTG AACAACTAAA 
1891 CCACGGCCGT AAAGTCTATG ACTTTATGCG CTGGGACTAC TGGGCTTTCG GCATCTCT