|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
hokA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
hokA
Search strains by all related name:
hokA b4455 ECK3544 JW3526 yiaZ
|
General information (Go to Linear View: )
|
|
Gene Name
|
hokA
|
|
Alternative name
|
b4455,ECK3544,JW3526,yiaZ
|
|
Location, Length
|
3,919,815 - 3,919,967
(
+
)
;
84.36
min
;
153
(bp) ,
50
(aa)
|
|
Product
|
toxic polypeptide, small
|
|
Note
|
ECK3544:JW3526:b4455
|
|
Function
|
|
|
PID
|
85676488
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
HOKA_ECOLI
(
P37305
;
Q2M7L8
)
|
|
- Protein name
|
RecName: Full=Protein hokA;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=hokA; Synonyms=yiaZ; OrderedLocusNames=b4455, JW3526;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
RecName: Full=Protein hokA
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
toxic polypeptide, small [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MPQKYRLLSL IVICFTLLFF TWMIRDSLCE LHIKQESYEL AAFLACKLKE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGGGTATTTT GGCTTTGACA TATTAGGGGC
-070 TATTCCATTT CATCGTCCAA CAAAATGGGT GCAGTACATA CTCGTTGGAA ATCAACACAG GAGGCTGGGA
0001 atgccgcaga aatatagatt actttcttta atagtgattt gtttcacgct tttatttttc acctggatga
0071 taagagattc actgtgtgaa ttgcatatta aacaggagag ttatgagctg gcggcgtttt tagcctgcaa
0141 attgaaagag taaGAGTCTT CGGCGGGAAA TTATTCCCGC CTTACTTACG GCGTTGCGCA TTCTCATTGC
0211 ACCCAAATTT ATTCTTCACA AAAATAATAA TAGATTTTAT TAC
|
