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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
xylA
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
xylA
Search strains by all related name:
xylA b3565 ECK3554 JW3537
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General information (Go to Linear View: )
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Gene Name
|
xylA
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Alternative name
|
b3565,ECK3554,JW3537
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|
Location, Length
|
3,909,650 - 3,910,972
(
+
)
;
84.14
min
;
1323
(bp) ,
440
(aa)
|
|
Product
|
D-xylose isomerase
|
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Note
|
ECK3554:JW3537:b3565
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Function
|
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PID
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85676478
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
XYLA_ECOLI
(
P00944
;
P00945; Q2M7M8
)
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- Protein name
|
RecName: Full=Xylose isomerase; EC=5.3.1.5; AltName: Full=D-xylulose keto-isomerase;
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- Synonyms
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- Gene name
|
Name=xylA; OrderedLocusNames=b3565, JW3537;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
|
D-xylose isomerase [Escherichia coli str. K-12 substr. MG1655]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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MMBR References
|
EMBO J. 1984;3:611-616
Molecular cloning, DNA structure and expression of the Escherichia coli D-xylose isomerase.
Briggs, K. A., W. E. Lancashire, and B. S. Hartley.
|
| Sequences |
Amino acid
FASTA format
|
0001 MQAYFDQLDR VRYEGSKSSN PLAFRHYNPD ELVLGKRMEE HLRFAACYWH TFCWNGADMF GVGAFNRPWQ
0071 QPGEALALAK RKADVAFEFF HKLHVPFYCF HDVDVSPEGA SLKEYINNFA QMVDVLAGKQ EESGVKLLWG
0141 TANCFTNPRY GAGAATNPDP EVFSWAATQV VTAMEATHKL GGENYVLWGG REGYETLLNT DLRQEREQLG
0211 RFMQMVVEHK HKIGFQGTLL IEPKPQEPTK HQYDYDAATV YGFLKQFGLE KEIKLNIEAN HATLAGHSFH
0281 HEIATAIALG LFGSVDANRG DAQLGWDTDQ FPNSVEENAL VMYEILKAGG FTTGGLNFDA KVRRQSTDKY
0351 DLFYGHIGAM DTMALALKIA ARMIEDGELD KRIAQRYSGW NSELGQQILK GQMSLADLAK YAQEHHLSPV
0421 HQSGRQEQLE NLVNHYLFDK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AATAGCAGTG TGAAATAACA TAATTGAGCA
-070 ACTGAAAGGG AGTGCCCAAT ATTACGACAT CATCCATCAC CCGCGGCATT ACCTGATTAT GGAGTTCAAT
0001 atgcaagcct attttgacca gctcgatcgc gttcgttatg aaggctcaaa atcctcaaac ccgttagcat
0071 tccgtcacta caatcccgac gaactggtgt tgggtaagcg tatggaagag cacttgcgtt ttgccgcctg
0141 ctactggcac accttctgct ggaacggggc ggatatgttt ggtgtggggg cgtttaatcg tccgtggcag
0211 cagcctggtg aggcactggc gttggcgaag cgtaaagcag atgtcgcatt tgagtttttc cacaagttac
0281 atgtgccatt ttattgcttc cacgatgtgg atgtttcccc tgagggcgcg tcgttaaaag agtacatcaa
0351 taattttgcg caaatggttg atgtcctggc aggcaagcaa gaagagagcg gcgtgaagct gctgtgggga
0421 acggccaact gctttacaaa ccctcgctac ggcgcgggtg cggcgacgaa cccagatcct gaagtcttca
0491 gctgggcggc aacgcaagtt gttacagcga tggaagcaac ccataaattg ggcggtgaaa actatgtcct
0561 gtggggcggt cgtgaaggtt acgaaacgct gttaaatacc gacttgcgtc aggagcgtga acaactgggc
0631 cgctttatgc agatggtggt tgagcataaa cataaaatcg gtttccaggg cacgttgctt atcgaaccga
0701 aaccgcaaga accgaccaaa catcaatatg attacgatgc cgcgacggtc tatggcttcc tgaaacagtt
0771 tggtctggaa aaagagatta aactgaacat tgaagctaac cacgcgacgc tggcaggtca ctctttccat
0841 catgaaatag ccaccgccat tgcgcttggc ctgttcggtt ctgtcgacgc caaccgtggc gatgcgcaac
0911 tgggctggga caccgaccag ttcccgaaca gtgtggaaga gaatgcgctg gtgatgtatg aaattctcaa
0981 agcaggcggt ttcaccaccg gtggtctgaa cttcgatgcc aaagtacgtc gtcaaagtac tgataaatat
1051 gatctgtttt acggtcatat cggcgcgatg gatacgatgg cactggcgct gaaaattgca gcgcgcatga
1121 ttgaagatgg cgagctggat aaacgcatcg cgcagcgtta ttccggctgg aatagcgaat tgggccagca
1191 aatcctgaaa ggccaaatgt cactggcaga tttagccaaa tatgctcagg aacatcattt gtctccggtg
1261 catcagagtg gtcgccagga acaactggaa aatctggtaa accattatct gttcgacaaa taaCGGCTAA
1331 CTGTGCAGTC CGTTGGCCCG GTTATCGGTA GCGATACCGG GCATTTTTTT AAGGAACGAT CGATATGTAT
1401 ATCGGGATAG ATCTTGGCAC CTC
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