|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
J Bacteriol. 1997;179(20):6228-37.
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization.
Link AJ, Phillips D, Church GM.
(
9335267
)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yibJ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yibJ
Search strains by all related name:
yibJ b3595 ECK3584 JW5647
|
General information (Go to Linear View: )
|
|
Gene Name
|
yibJ
|
|
Alternative name
|
b3595,ECK3584,JW5647
|
|
Location, Length
|
3,872,493 - 3,873,194
(
-
)
;
83.35
min
;
702
(bp) ,
233
(aa)
|
|
Product
|
predicted Rhs-family protein
|
|
Note
|
ECK3584:JW5647:b3595
|
|
Function
|
|
|
PID
|
85676448
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YIBJ_ECOLI
(
P32109
;
P76717; Q2M7Q8
)
|
|
- Protein name
|
RecName: Full=Putative uncharacterized protein yibJ;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yibJ; OrderedLocusNames=b3595, JW5647;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
predicted Rhs-family protein [Escherichia coli str. K-12 substr. W3110]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MQMLDRLESE ILADRVSEES RRWLASCGLT VEQMKNQMDP VYTPARKIHL YHCDHRGLPL ALISTEGATA
0071 WCAEYDEWGN LLSDENPHHL QQLIRLPGQQ YDEESGLYYN RHRYYDPLLG RYITQDPIGL KGGWNFYQYP
0141 LNPVINVDPQ GLVDINLYPE SDLIHSVADE INIPGVFTIG GHGTPTSIES ATRSIMTAKD LAYLIKFDGN
0211 YKDGMTVWLF SCNTGKGQNS FAS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acaagtttga tgacaatgaa attataactt
-070 ccgctattga taagctgaag cgttcatagc gtgagttgcc tatgcacagt gggggattcc cgccggcacg
0001 gtgcagatgc tcgaccggct ggaaagtgaa atcctggctg accgggtgag tgaggaaagc cgccgctggc
0071 tggcatcgtg cggcctgacc gtggagcaga tgaaaaacca gatggacccg gtgtacacgc cggcgcgaaa
0141 aatccacctg taccactgcg accatcgcgg cctgccgctg gcgctcatca gcacggaagg ggcaacagcg
0211 tggtgcgcag aatatgatga atggggcaac ctgctgagtg atgagaaccc gcatcatctg cagcagctca
0281 ttcgcctgcc gggtcagcag tatgatgagg agtccggcct gtattacaac cgccaccgct attatgaccc
0351 gctgctgggg cggtatatca ctcaggatcc gattggactg aaggggggat ggaattttta tcagtatccg
0421 ttgaatccgg tcataaatgt agatccgcaa ggtttggttg atataaattt ataccccgaa agtgatctta
0491 tccattctgt agctgatgag attaatatcc caggcgtttt cacaatcggg gggcatggta cccccacatc
0561 tattgaatcc gcaacgcgca gtatcatgac agctaaagat ctagcatatc taattaaatt tgatgggaat
0631 tataaagatg ggatgacagt ttggttattt tcttgtaata caggtaaagg acaaaattca tttgctagct
0701 aattagctaa agagttacat acaaatgtaa taggacctga cacgctatgg acgtggtggg ggcgaggaac
0771 taatggtaag ttaaaaatgg atacagtgct aa
|
