MG1655
W3110
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Gene Report : agaB
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
Related gene (MG1655 PEC)
     Gene Search Search MG1655 PEC by gene name:  agaB
Related strains
     Strains Search Search strains by gene name:  agaB   Search strains by all related name:  agaB b3138 ECK3126 JW3107 yraD

General information  (Go to Linear View:)
 Gene Name agaB  
 Alternative name b3138,ECK3126,JW3107,yraD  
 Location, Length 3,284,025 - 3,284,501 (  +  ) ;   70.68 min ; 477 (bp) ,   158 (aa) Go to Linear View
 Product N-acetylgalactosamine-specific enzyme IIB component of PTS  
 Note ECK3126:JW3107:b3138  
 Function  
 PID 85675934  
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) PTPB1_ECOLI ( P42909 ; Q2M972 )
    -  Protein name RecName: Full=N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1; EC=2.7.1.69; AltName: Full=PTS system N-acetylgalactosamine-specific EIIB component 1; AltName: Full=EIIB-Aga;  
    -  Synonyms  
    -  Gene name Name=agaB; Synonyms=yraD; OrderedLocusNames=b3138, JW3107;  

 Linear View
View Location
   3275.0  –  3300.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP  
    PDB
         PSI-BLAST Chain A, Structure Of Iib Domain Of The Mannose Transporter Of E. Coli  
    SWISS-PROT
         BLAST RecName: Full=N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 1; AltName: Full=PTS system N-acetylgalactosamine-specific EIIB component 1; AltName: Full=EIIB-Aga  
        PSI-BLAST
    nr
         BLAST N-acetylgalactosamine-specific enzyme IIB component of PTS [Escherichia coli str. K-12 substr. MG1655]  
Pfam 27.0   (database updated : 2013-03 )
    Pfam

Other Cross-Reference
    EcoCyc agaB 

Sequences
Amino acid
FASTA format 
0001 MTSPNILLTR IDNRLVHGQV GVTWTSTIGA NLLVVVDDVV ANDDIQQKLM GITAETYGFG IRFFTIEKTI 
0071 NVIGKAAPHQ KIFLICRTPQ TVRKLVEGGI DLKDVNVGNM HFSEGKKQIS SKVYVDDQDL TDLRFIKQRG 
0141 VNVFIQDVPG DQKEQIPD
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             AAGGAGATAA CTAAACCTTA ATAAATACAT 
-070 CACTACAATA TCGCAACAAT AATATATTTA AAAAAATTAT ATTATTCAAC TTTATGGTGA GGATTACACA 
0001 atgaccagtc caaatattct cttaacccgt attgataacc gtctggttca cggtcaggtt ggcgtgacct 
0071 ggacatccac catcggtgca aatctgctgg tagtcgtgga tgatgttgtc gctaacgatg atattcaaca 
0141 gaaattaatg ggtattaccg cggaaaccta cggctttggc attcgtttct ttactatcga aaaaaccatt 
0211 aacgtcatcg gcaaagctgc accacatcag aagatcttcc tgatttgccg tacgccacaa acggtacgta 
0281 aattggtaga aggtggtatt gacctgaaag atgtcaacgt cggcaatatg catttctcgg aagggaaaaa 
0351 gcaaatcagc agtaaagttt atgtcgatga ccaggatctc acggacttac gttttattaa acaacgtggc 
0421 gtgaatgttt tcattcagga cgtccctggc gatcaaaaag aacaaatccc tgactaaATC TAAAATCGCC 
0491 TTAATATTGG TTTGAGGTAA TAAAAATGCA TGAAATAACC CTACTTCAGG GATTATCCCT GGCGGCGTTA 
0561 GTTTTTGTTC TGGGGAT