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PEC Original Annotations
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Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ykgB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ykgB
Search strains by all related name:
ykgB b0301 ECK0301 JW5038
|
General information (Go to Linear View: )
|
|
Gene Name
|
ykgB
|
|
Alternative name
|
b0301,ECK0301,JW5038
|
|
Location, Length
|
316,950 - 317,543
(
-
)
;
6.82
min
;
594
(bp) ,
197
(aa)
|
|
Product
|
conserved inner membrane protein
|
|
Note
|
ECK0301:JW5038:b0301
|
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Function
|
|
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PID
|
85674446
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YKGB_ECOLI
(
P75685
;
P71303; Q2MCC0
)
|
|
- Protein name
|
RecName: Full=Inner membrane protein ykgB;
|
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- Synonyms
|
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- Gene name
|
Name=ykgB; OrderedLocusNames=b0301, JW5038;
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Homology Analysis
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BLAST
|
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Bacteria
|
|
GTOP
|
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PDB
|
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PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
RecName: Full=Inner membrane protein ykgB
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
conserved inner membrane protein [Escherichia coli str. K-12 substr. W3110]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MEKYLHLLSR GDKIGLTLIR LSIAIVFMWI GLLKFVPYEA DSITPFVANS PLMSFFYEHP EDYKQYLTHE
0071 GEYKPEARAW QTANNTYGFS NGLGVVEVII ALLVLANPVN RWLGLLGGLM AFTTPLVTLS FLITTPEAWV
0141 PALGDAHHGF PYLSGAGRLV LKDTLMLAGA VMIMADSARE ILKQRSNESS STLKTEY
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tagccagaaa atataatgct tcatcctgga
-070 aagtcacatc gatgcgaatt gataataatt caaccgcaac agcagtattg tataaataag gatgttcaca
0001 atggaaaaat acctgcacct gttaagtcgg ggagataaaa ttggcctgac attgattcgt ctgagtattg
0071 caattgtttt tatgtggatt gggttattaa agtttgtccc ttacgaggca gacagcatta caccattcgt
0141 cgcaaacagt ccactaatgt cgttctttta tgaacacccg gaagactata aacagtatct gactcacgaa
0211 ggcgaataca aaccagaagc aagggcatgg caaacggcca ataataccta tggtttttcc aacggtcttg
0281 gcgtcgtgga ggtgattatt gctctgctgg ttttggctaa tcctgtcaat cgctggttag gtttattggg
0351 aggactgatg gcatttacca cgccgctggt aacactctca tttttaatca ccaccccgga ggcatgggta
0421 cccgcattgg gtgacgctca tcatggtttc ccttatttat ccggtgctgg tcgcctggta ttgaaagata
0491 ctctgatgct ggcaggtgca gtcatgataa tggcagattc ggcgcgggaa attcttaaac aacgcagtaa
0561 tgaatccagt tcaacgttaa aaactgaata ttgataatcc gaacactgtc tgttgttcac tttttcaggc
0631 gtcaggcccc ctttctgatg atgaagcctg acgccatatt accggagata tgacagagtg aaga
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