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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
lpcA
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Related strains
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Strains Search
|
Search strains by gene name:
lpcA
Search strains by all related name:
lpcA b0222 ECK0223 gmhA isn JW0212 tfrA yafI
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General information (Go to Linear View: )
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Gene Name
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lpcA
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Alternative name
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b0222,ECK0223,gmhA,isn,JW0212,tfrA,yafI
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Location, Length
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243,543 - 244,121
(
+
)
;
5.24
min
;
579
(bp) ,
192
(aa)
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Product
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D-sedoheptulose 7-phosphate isomerase
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Note
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ECK0223:JW0212:b0222
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Function
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PID
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4902958
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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GMHA_ECOLI
(
P63224
;
P51001
)
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- Protein name
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RecName: Full=Phosphoheptose isomerase; EC=5.3.1.-; AltName: Full=Sedoheptulose 7-phosphate isomerase;
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- Synonyms
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- Gene name
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Name=gmhA; Synonyms=lpcA, tfrA, yafI; OrderedLocusNames=b0222, JW0212;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
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phosphoheptose isomerase [Escherichia coli APEC O1]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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MMBR References
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J Biol Chem. 1996;271:3608-3614
Biosynthesis of inner core lipopolysaccharide in enteric bacteria: identification and characterization of a conserved phosphoheptose isomerase.
Brooke, J. S., and M. A. Valvano.
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| Sequences |
Amino acid
FASTA format
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0001 MYQDLIRNEL NEAAETLANF LKDDANIHAI QRAAVLLADS FKAGGKVLSC GNGGSHCDAM HFAEELTGRY
0071 RENRPGYPAI AISDVSHISC VGNDFGFNDI FSRYVEAVGR EGDVLLGIST SGNSANVIKA IAAAREKGMK
0141 VITLTGKDGG KMAGTADIEI RVPHFGYADR IQEIHIKVIH ILIQLIEKEM VK
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 TCAAAAAGTC CTGGTCATAG CACCTGCCCG
-070 TACTTCTCGC TTTTGGCGGT ATCCGGTACA CTGCATTTTG TCTATTACAT TTATGCTGAA GGATATCCTC
0001 atgtaccagg atcttattcg taacgaactg aacgaagcgg cggaaacgct ggctaacttt ttaaaagatg
0071 acgccaatat tcacgccatt cagcgcgcgg cggtcctgtt agcagacagc tttaaagccg gtggcaaagt
0141 gctttcctgc ggcaacggcg gttcccattg cgacgctatg cactttgccg aagagttgac cggtcgctac
0211 cgtgaaaacc gtccgggcta cccggcgatt gctatttctg acgttagtca tatttcctgc gtcggtaatg
0281 atttcggttt caatgatatt ttctcccgct acgttgaagc ggtaggtcgc gaaggcgatg tactgctggg
0351 gatctccacc tccggtaact ctgcaaacgt gatcaaagcg atcgcagcgg cgcgtgagaa gggaatgaaa
0421 gtgatcaccc tgaccggtaa agacggcggc aaaatggctg gcacggcgga tatcgaaatt cgcgtaccgc
0491 actttggtta tgccgaccgc attcaggaga ttcacattaa agtgatccat atcctgatcc agttgattga
0561 aaaagagatg gttaagtaaG TCTGGCGTAG GCCGGATAAG ACGTTTACGC CGCATCCGGC ATTTGTGCGC
0631 TGATGCCTGA TGCGACGCTG ACGCGTCTTA TCATGCCTAC AAATCTGTA
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