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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafU
Search strains by all related name:
yafU b0218 ECK0218 JW0207
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafU
|
|
Alternative name
|
b0218,ECK0218,JW0207
|
|
Location, Length
|
238,746 - 239,084
(
-
)
;
5.14
min
;
339
(bp) ,
112
(aa)
|
|
Product
|
predicted inner membrane protein
|
|
Note
|
ECK0218:JW0207:b0218
|
|
Function
|
|
|
PID
|
85674385
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YAFU_ECOLI
(
P77354
;
Q2MCG0
)
|
|
- Protein name
|
RecName: Full=Putative inner membrane protein yafU;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafU; OrderedLocusNames=b0218, JW0207;
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
RecName: Full=Putative inner membrane protein yafU
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
Inner membrane protein yafU [Escherichia coli IAI1]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MSSERDLVNF LGDFSMDVAK AVIAGGVATA IGSLASFACV SFGFPVILVG GAILLTGIVC TVVLNEIDAQ
0071 CHLSEKLKYA IRDGLKRQQE LDKWKRENMT PFMYVLNTPP VI
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgtccagacg cctgtgcagc ttattctcca
-070 cgtgccagtg gtttcggatt gctgtggcga acttctctgc ggttaaatca gcagaaccat agaatttatt
0001 atgagttcag agcgagatct ggttaatttt cttggcgatt tttcaatgga tgtggccaaa gcagttatag
0071 ccggtggtgt tgcaaccgct attggaagtc tggcttcttt tgcctgtgtt agctttggct ttccagtaat
0141 tcttgtcgga ggagcaattt tactgacagg gatagtgtgt acagttgttt taaatgaaat cgatgctcaa
0211 tgccatttat cagaaaaatt aaaatatgca attagagatg gactaaaacg gcaacaggaa cttgataaat
0281 ggaaaaggga aaacatgact ccatttatgt atgttcttaa cactccaccc gtgatatgag gattaaccat
0351 gcgtttacat gttaaattaa aagagtttct ttcgatgttt tttatggcca tattattttt ccctgcattc
0421 aatgcttctt tgtttttta
|
