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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
hrpB
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Related strains
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Strains Search
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Search strains by gene name:
hrpB
Search strains by all related name:
hrpB b0148 ECK0147 JW0144 yadO
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General information (Go to Linear View: )
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Gene Name
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hrpB
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Alternative name
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b0148,ECK0147,JW0144,yadO
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Location, Length
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162,105 - 164,534
(
+
)
;
3.49
min
;
2430
(bp) ,
809
(aa)
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Product
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predicted ATP-dependent helicase
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Note
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ECK0147:JW0144:b0148
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Function
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PID
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85674354
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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HRPB_ECOLI
(
P37024
;
P75663; Q2MCG2
)
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- Protein name
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RecName: Full=ATP-dependent RNA helicase hrpB; EC=3.6.1.-;
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- Synonyms
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- Gene name
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Name=hrpB; Synonyms=yadO; OrderedLocusNames=b0148, JW0144;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
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ATP-dependent helicase HrpB [Escherichia coli DH1]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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MMBR References
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Nucleic Acids Res. 1995;23:595-598
Cloning and characterization of the hrpA gene in the terC region of Escherichia coli that is highly similar to the DEAH family RNA helicase genes of Saccharomyces cerevisiae.
Moriya, H., H. Kasai, and K. Isono.
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| Sequences |
Amino acid
FASTA format
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0001 MSSLPVAAVL PELLTALDCA PQVLLSAPTG AGKSTWLPLQ LLAHPGINGK IILLEPRRLA ARNVAQRLAE
0071 LLNEKPGDTV GYRMRAQNCV GPNTRLEVVT EGVLTRMIQR DPELSGVGLV ILDEFHERSL QADLALALLL
0141 DVQQGLRDDL KLLIMSATLD NDRLQQMLPE APVVISEGRS FPVERRYLPL PAHQRFDDAV AVATAEMLRQ
0211 ESGSLLLFLP GVGEIQRVQE QLASRIGSDV LLCPLYGALS LNDQRKAILP APQGMRKVVL ATNIAETSLT
0281 IEGIRLVVDC AQERVARFDP RTGLTRLITQ RVSQASMTQR AGRAGRLEPG ISLHLIAKEQ AERAAAQSEP
0351 EILQSDLSGL LMELLQWGCS DPAQMSWLDQ PPVVNLLAAK RLLQMLGALE GERLSAQGQK MAALGNDPRL
0421 AAMLVSAKND DEAATAAKIA AILEEPPRMG NSDLGVAFSR NQPAWQQRSQ QLLKRLNVRG GEADSSLIAP
0491 LLAGAFADRI ARRRGQDGRY QLANGMGAML DANDALSRHE WLIAPLLLQG SASPDARILL ALLVDIDELV
0561 QRCPQLVQQS DTVEWDDAQG TLKAWRRLQI GQLTVKVQPL AKPSEDELHQ AMLNGIRDKG LSVLNWTAEA
0631 EQLRLRLLCA AKWLPEYDWP AVDDESLLAA LETWLLPHMT GVHSLRGLKS LDIYQALRGL LDWGMQQRLD
0701 SELPAHYTVP TGSRIAIRYH EDNPPALAVR MQEMFGEATN PTIAQGRVPL VLELLSPAQR PLQITRDLSD
0771 FWKGAYREVQ KEMKGRYPKH VWPDDPANTA PTRRTKKYS
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 AAAGAACAGA CGTTGCGGTT CAGACATGTG
-070 AGGCACTCGG TTATGAATTA CCGCGATGCT ACAATGTGGC GCGAAGAATG TTAACCCTCT GGAGCGTTTT
0001 gtgtcgtcgt tgcccgttgc tgccgtctta cctgaattac ttaccgctct cgattgtgcg ccgcaggtat
0071 tattaagtgc gccgaccggg gccgggaaat caacctggct gccgctgcaa ctgctggcgc atcccggcat
0141 taacgggaaa attatcctgc tggagccgcg tcgtctggcg gcgcgtaacg tcgcgcaacg gctggcggag
0211 ctgcttaacg aaaagccagg cgataccgtt ggctaccgga tgcgtgcgca aaactgcgtc gggccgaata
0281 cccgcctgga agtggttacc gaaggcgtgc tgacgcgcat gatccagcgt gacccggaac tgagcggtgt
0351 tggactggtg atccttgatg aatttcatga gcgcagcttg caggcggatt tggcgttggc gctgttactc
0421 gatgtgcaac aaggtctgcg tgatgacctt aaactgctga ttatgtcggc taccctggac aacgaccgct
0491 tgcagcaaat gctgccagaa gcgcctgtcg tcatctcaga agggcgctcg tttccggttg aacgccgtta
0561 tttaccgctg cccgcgcatc agcgttttga cgatgccgtt gcggtagcca ccgctgaaat gctgcgtcag
0631 gaaagcggat cattactgtt atttttacct ggcgtcggag aaattcagcg tgtgcaggaa caactggctt
0701 cgcgcatcgg cagtgatgta ttgctctgcc cgctgtatgg cgcgttgtcg ctgaacgatc agcgaaaagc
0771 gatcctcccg gcaccgcaag ggatgcgcaa agtggtgctg gcgaccaata ttgctgaaac cagtttaacc
0841 attgaaggta ttcgtctggt ggtggattgt gcccaggagc gtgtggcgcg ttttgatccg cgcacggggc
0911 ttacgcgact gattactcaa cgcgttagcc aggcatccat gacgcagcgt gccgggcgcg ccgggcgtct
0981 ggagccgggt atcagcctgc atttaatcgc caaagaacaa gcagaacgcg ccgcggcgca aagtgaaccg
1051 gagatcttac aaagcgatct ttccggtttg ctgatggaat tactgcaatg gggatgcagc gatccggcgc
1121 agatgagctg gctggatcaa ccgccagtag tgaatctact ggccgcgaaa cgtctgttac aaatgctggg
1191 ggcactggag ggtgaacggc ttagtgcgca agggcaaaaa atggcagcgc tgggtaacga tccgcgttta
1261 gcggcaatgc tggttagcgc gaagaacgac gacgaagctg ctaccgcggc aaaaattgcc gccattctcg
1331 aagagccgcc acggatgggc aatagtgacc tgggcgtggc gttttcgcgc aatcaaccag cctggcagca
1401 acgtagtcag caactgttaa aacgcttaaa cgtacgtggc ggtgaggcag acagttcgct tatcgcgccg
1471 ctacttgccg gggcgtttgc cgatcgcatt gctcgtcgcc gtgggcaaga tggacgctat caactggcaa
1541 acggcatggg agcgatgctc gatgccaacg acgcgctaag ccgccacgaa tggttgatcg caccgttatt
1611 attgcagggc agcgcctcgc cggatgcgcg gattttactg gcgctgctgg tcgatattga tgagttagta
1681 caacgctgcc cgcagctggt acagcagtct gacactgtgg agtgggatga cgcgcaaggt acgctgaaag
1751 cctggcgtcg gctacaaatc ggtcagttga cggtgaaagt gcagccgctg gcgaaaccgt cagaagacga
1821 gttgcatcag gcgatgctta atggcatccg tgataaaggt ttaagcgtgc tcaactggac ggcggaagcg
1891 gaacagctac gcttgcgttt gttatgcgcc gcaaagtggt tgccggaata tgactggcca gcggttgatg
1961 atgaaagttt attggcagcg ctggaaacgt ggctgctgcc acatatgact ggcgtacatt cactacgcgg
2031 cctgaaatca ctcgacattt atcaggcact acgcggatta cttgattggg gaatgcagca acgtctggat
2101 agtgaattgc ctgcgcatta cactgtgccg acgggaagcc ggatcgccat tcgttatcat gaagataacc
2171 cgcccgcgct ggcggtgaga atgcaagaga tgtttggcga ggccaccaat ccgacgatcg cccaggggcg
2241 cgtgccgctg gtgctggagt tgctttcacc tgcccaaagg ccattacaaa tcacacgaga tttgagcgac
2311 ttctggaaag gagcgtaccg tgaggtgcaa aaagagatga aagggcgtta tcccaaacat gtctggccgg
2381 acgacccggc aaatactgca ccgacgcgac ggacgaaaaa gtattcgtaa GGTTGGTTTT CTCCCTCTCC
2451 CTGTGGGAGA GGGCCGGGGT GAGGGCATCA GCGCGCACGT TCACCCTCAC CCTAACCCTC TCCCTCAAGG
2521 GAGAGGGGAC
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