|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
oppF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
oppF
Search strains by all related name:
oppF b1247 ECK1241 JW1239
|
General information (Go to Linear View: )
|
|
Gene Name
|
oppF
|
|
Alternative name
|
b1247,ECK1241,JW1239
|
|
Location, Length
|
1,307,478 - 1,308,482
(
+
)
;
28.14
min
;
1005
(bp) ,
334
(aa)
|
|
Product
|
oligopeptide transporter subunit
|
|
Note
|
ATP-binding component of ABC superfamily; ECK1241:JW1239:b1247
|
|
Function
|
|
|
PID
|
1742036
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
OPPF_ECOLI
(
P77737
;
P76920
)
|
|
- Protein name
|
RecName: Full=Oligopeptide transport ATP-binding protein oppF;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=oppF; OrderedLocusNames=b1247, JW1239;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
oligopeptide transporter subunit [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG CGKSTFARAI
0071 IGLVKATDGH VAWLGKELLG MKPDEWRAVR SDIQMIFQDP LASLNPRMTI GEIIAEPLRT YHPKMSRQEV
0141 RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI LEPKLIICDE PVSALDVSIQ AQVVNLLQQL
0211 QREMGLSLIF IAHDLAVVKH ISDRVLVMYL GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT
0281 IQLLEGELPS PINPPSGCVF RTRCPIAGPE CAKTRPVLEG SFRHSVSCLK VDPL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTTGTCCGCA TGCGATGGAA ATTTGTAGTA
-070 GCGCACCGCC GCTGGAAGAG TTTACGCCTG GCCGTCTGCG TGCTTGCTTT AAACCGGTGG AGGAACTGTT
0001 atgaatgctg taactgaagg aagaaaagtc ctccttgaaa tcgccgatct taaagtgcac tttgaaatca
0071 aagatggcaa acagtggttc tggcaaccgc cgaaaacgct caaagccgtc gatggtgtca ctcttcgcct
0141 gtatgaaggg gaaacattag gtgtggtagg ggaatcggga tgcggtaagt ccacctttgc tcgcgccatc
0211 atcggtttgg tcaaggcgac cgacggtcat gttgcctggt taggtaaaga gttgctgggc atgaaacccg
0281 atgaatggcg tgccgttcgc agtgatattc agatgatttt ccaggatccg ttggcatcgc taaacccgcg
0351 tatgaccatc ggcgagatca tcgctgaacc actgcgtact tatcatccga aaatgtcacg ccaggaagtt
0421 cgcgagcgcg tgaaggcgat gatgctgaaa gtcgggttat tgcctaacct gattaaccgc tatccgcatg
0491 agttctctgg tgggcagtgc cagcgtatcg ggattgcgcg tgctcttatt cttgaaccga agctgattat
0561 ctgtgatgag ccggtgtcgg cgctggacgt gtcaattcag gcacaggtgg tcaacctgct ccagcaattg
0631 caacgtgaga tgggattgtc attaattttt atcgctcatg acctggccgt ggtaaaacac atttccgatc
0701 gtgtgttggt gatgtatctc ggccatgcgg tagaactggg gacctatgat gaggtctacc acaatccact
0771 acatccttac accagggcat tgatgtcggc agtccccata cctgatccgg atctggagaa gaacaaaacc
0841 atccagttac tggaagggga attaccgtcg ccgatcaacc cgccttccgg ttgtgttttc cgtacccgtt
0911 gcccgattgc cggtccagag tgcgccaaaa cacgtcctgt tctggagggg agtttcagac actccgtttc
0981 ttgcctgaaa gtcgatccgc tttaaAAACA ATAAGGGCTG ACAGTTGTCA GCCCTTTTTC ACGCTAAAAG
1051 CGATTATTTA TTCCCGCCAG ATGATATGGC AAAGTTTGTG ATCTTTTTCG CGGCA
|
