MG1655
W3110
Search for
  Japanese | English
Gene Report : hepA
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
Related gene (MG1655 PEC)
     Gene Search Search MG1655 PEC by gene name:  hepA
Related strains
     Strains Search Search strains by gene name:  hepA   Search strains by all related name:  hepA b0059 ECK0060 JW0058 rapA yabA

General information  (Go to Linear View:)
 Gene Name hepA  
 Alternative name b0059,ECK0060,JW0058,rapA,yabA  
 Location, Length 60,358 - 63,264 (  -  ) ;   1.30 min ; 2907 (bp) ,   968 (aa) Go to Linear View
 Product RNA polymerase-associated helicase protein  
 Note ATPase and RNA polymerase recycling factor; ECK0060:JW0058:b0059  
 Function  
 PID 21321940  
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) RAPA_ECOLI ( P60240 ; P23852; P75633 )
    -  Protein name RecName: Full=RNA polymerase-associated protein rapA; EC=3.6.1.-; AltName: Full=ATP-dependent helicase hepA;  
    -  Synonyms  
    -  Gene name Name=rapA; Synonyms=hepA, yabA; OrderedLocusNames=b0059, JW0058;  

 Linear View
View Location
   50.0  –  75.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP  
    PDB
        PSI-BLAST  
    SWISS-PROT
         BLAST RecName: Full=RNA polymerase-associated protein rapA; AltName: Full=ATP-dependent helicase hepA  
         PSI-BLAST RecName: Full=RNA polymerase-associated protein rapA; AltName: Full=ATP-dependent helicase hepA
    nr
         BLAST ATP-dependent helicase HepA [Escherichia coli O157:H7 EDL933]  
Pfam 27.0   (database updated : 2013-03 )
    Pfam

Other Cross-Reference
    EcoCyc hepA 

MMBR References
Nucleic Acids Res. 1993;21(3):751-2.
An expanding family of helicases within the 'DEAD/H' superfamily.
Bork P, Koonin EV. ( 8382805 )

Sequences
Amino acid
FASTA format
0001 MPFTLGQRWI SDTESELGLG TVVAVDARTV TLLFPSTGEN RLYARSDSPV TRVMFNPGDT ITSHDGWQMQ 
0071 VEEVKEENGL LTYIGTRLDT EESGVALREV FLDSKLVFSK PQDRLFAGQI DRMDRFALRY RARKYSSEQF 
0141 RMPYSGLRGQ RTSLIPHQLN IAHDVGRRHA PRVLLADEVG LGKTIEAGMI LHQQLLSGAA ERVLIIVPET 
0211 LQHQWLVEML RRFNLRFALF DDERYAEAQH DAYNPFDTEQ LVICSLDFAR RSKQRLEHLC EAEWDLLVVD 
0281 EAHHLVWSED APSREYQAIE QLAEHVPGVL LLTATPEQLG MESHFARLRL LDPNRFHDFA QFVEEQKNYR 
0351 PVADAVAMLL AGNKLSNDEL NMLGEMIGEQ DIEPLLQAAN SDSEDAQSAR QELVSMLMDR HGTSRVLFRN 
0421 TRNGVKGFPK RELHTIKLPL PTQYQTAIKV SGIMGARKSA EDRARDMLYP ERIYQEFEGD NATWWNFDPR 
0491 VEWLMGYLTS HRSQKVLVIC AKAATALQLE QVLREREGIR AAVFHEGMSI IERDRAAAWF AEEDTGAQVL 
0561 LCSEIGSEGR NFQFASHMVM FDLPFNPDLL EQRIGRLDRI GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD 
0631 AFEHTCPTGR TIYDSVYNDL INYLASPDQT EGFDDLIKNC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ 
0701 ALAESIEEQD DDTNLIAFAM NLFDIIGINQ DDRGDNMIVL TPSDHMLVPD FPGLSEDGIT ITFDREVALA 
0771 REDAQFITWE HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELIY VVEAQAPKQL QLNRFLPPTP 
0841 VRMLLDKNGN NLAAQVEFET FNRQLNAVNR HTGSKLVNAV QQDVHAILQL GEAQIEKSAR ALIDAARNEA 
0911 DEKLSAELSR LEALRAVNPN IRDDELTAIE SNRQQVMESL DQAGWRLDAL RLIVVTHQ

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             tagcgccctt tccattcctg gacctgaata 
-070 acaccactac ctcataagca cggtagcggg tggttattgc ctgcaattaa agatatagag ccgaacacat 
0001 atgcctttta cacttggtca acgctggatc agcgatacag aaagcgaatt gggacttgga accgttgtcg 
0071 cggtggatgc gcgaactgtc actttacttt tcccatctac tggtgaaaac cgtctgtacg cacgcagtga 
0141 ttcccccgtg acccgcgtga tgttcaaccc tggtgatacc attaccagcc atgacggctg gcagatgcaa 
0211 gtcgaagaag taaaagaaga aaatggcttg ctgacctata tcggtactcg cctggatact gaagagtccg 
0281 gcgtagccct gcgtgaagtt ttccttgata gcaaactggt gttcagcaaa ccgcaggacc gtctgtttgc 
0351 cgggcagatt gaccgtatgg accgctttgc gctgcgttat cgcgcgcgta aatattccag cgaacagttc 
0421 cgtatgccgt acagcggcct gcgcggtcag cgtaccagcc tgatcccgca tcagctcaac atcgctcatg 
0491 atgttggtcg ccgccacgcg ccgcgcgtcc tgctggctga cgaagtgggt ttagggaaaa ccattgaagc 
0561 cgggatgatc ctgcatcagc aactgctctc tggcgctgct gaacgtgtgc taattatcgt cccggaaacc 
0631 ttacagcatc agtggctggt agaaatgctg cgccgtttca acctgcgctt tgcgctattt gatgatgagc 
0701 gttatgccga agctcagcac gatgcttaca acccgtttga caccgaacag ctggtgattt gctcgctgga 
0771 ttttgcccgt cgtagcaaac agcgcctgga acatctctgt gaagccgaat gggacctgct ggtggtcgat 
0841 gaagcgcatc acctggtgtg gagcgaagat gcgccaagcc gtgaatatca ggccattgaa caactggcag 
0911 agcacgtgcc gggcgttctg ctgctgaccg cgaccccgga acagctgggg atggaaagcc acttcgcccg 
0981 tctgcgtctg ctggacccga accgtttcca cgattttgcg cagttcgttg aagagcagaa aaattatcgt 
1051 ccggttgcgg acgccgttgc catgctgctg gcaggtaaca aactgagcaa tgacgaactg aacatgctcg 
1121 gcgagatgat cggcgagcag gatatcgagc cgctgttgca ggcagcaaac agcgacagcg aagatgccca 
1191 gagcgcccgt caggagctgg tttcgatgct gatggatcgc cacggcacca gccgcgtgct gttccgtaac 
1261 acgcgtaacg gtgtgaaagg attcccgaaa cgcgagctgc acaccattaa gctgccgcta ccgacgcagt 
1331 atcagacggc tattaaagtc tccggcatta tgggcgcacg taaaagtgcg gaagatcgtg ctcgcgatat 
1401 gctctacccg gagcgtattt atcaggaatt tgaaggtgat aacgccacct ggtggaactt cgatccgcgc 
1471 gttgagtggc tgatgggcta cctgaccagc catcgctctc agaaagtgct ggtgatctgc gccaaagctg 
1541 ccactgcgct gcaactggag caggtactgc gcgaacgtga aggtattcgc gctgcggtgt tccacgaagg 
1611 tatgtcgatt atcgaacgtg accgcgctgc cgcctggttt gccgaagaag acaccggcgc acaggtactg 
1681 ctgtgctcag aaatcggttc tgaaggacgt aacttccagt tcgccagcca catggtgatg tttgacctgc 
1751 cattcaaccc ggatctactg gagcagcgta ttggtcgtct ggatcgtatc ggccaggcgc acgatattca 
1821 gatccatgtg ccttatctgg agaaaaccgc tcagtcggtg ctggtgcgct ggtatcacga aggtctggat 
1891 gcatttgagc acacctgccc gaccggacgc actatttacg atagcgtata caacgatctg attaactatc 
1961 tggcttcacc ggatcaaacc gaaggctttg acgatctgat caaaaactgc cgcgagcaac atgaagcgct 
2031 gaaagcacag ctggaacagg gtcgtgaccg cctgctggaa atccactcca acggtggcga aaaagcccag 
2101 gcactggcag aaagcattga agagcaggat gacgatacca acctgatcgc cttcgccatg aacctgttcg 
2171 atattatcgg tatcaatcag gacgatcgcg gcgacaacat gatcgtgctg acgccgtccg atcatatgct 
2241 ggtgccggac ttccctggcc tgtcggaaga tggcatcacc atcacctttg atcgtgaagt ggcgctggcg 
2311 cgtgaagatg cacagtttat tacctgggag catccgctga tccgcaacgg tctggatctg atcctttctg 
2381 gcgataccgg tagcagcacg atttcactgt taaaaaacaa agcgttgccg gtaggtacgc tgttggtgga 
2451 actgatttat gtggttgaag cccaggctcc gaagcagttg cagctcaacc gcttcctgcc accgacgccg 
2521 gtacgtatgc tgctggataa aaacggcaac aacctggcgg cgcaggtaga gtttgaaacc tttaaccgcc 
2591 agcttaacgc ggttaaccgt cacaccggca gcaaactggt taacgccgtg cagcaggatg ttcacgctat 
2661 ccttcaactg ggtgaagcgc agatcgagaa atctgcccgt gcattgattg atgcagcgcg taacgaagcc 
2731 gacgaaaaac tgtctgccga gctgtctcgt ctggaagctc tgcgtgcagt gaacccgaac attcgtgacg 
2801 acgaactgac cgccattgag agcaaccgtc agcaggtaat ggaaagcctg gatcaggcag gttggcgtct 
2871 ggatgccctg cgtttgatcg ttgtaacgca tcagtaacgg agccgaaaat ggggatggaa aactacaatc 
2941 caccgcagga accctggttg gttatcctgt atcaggatga ccatattatg gtggtcaaca agccgag