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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
deoB
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Related strains
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Strains Search
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Search strains by gene name:
deoB
Search strains by all related name:
deoB b4383 drm ECK4375 JW4346 thyR tlr
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General information (Go to Linear View: )
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Gene Name
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deoB
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Alternative name
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b4383,drm,ECK4375,JW4346,thyR,tlr
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Location, Length
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4,624,283 - 4,625,506
(
+
)
;
99.53
min
;
1224
(bp) ,
407
(aa)
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Product
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phosphopentomutase
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Note
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ECK4375:JW4346:b4383
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Function
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PID
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85677122
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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DEOB_ECOLI
(
P0A6K6
;
P07651; Q2M5T4
)
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- Protein name
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RecName: Full=Phosphopentomutase; EC=5.4.2.7; AltName: Full=Phosphodeoxyribomutase;
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- Synonyms
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- Gene name
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Name=deoB; Synonyms=drm, thyR; OrderedLocusNames=b4383, JW4346;
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MMBR References
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J Mol Biol. 1979;133(1):1-17.
Evidence for the existence of three promoters for the deo operon of Escherichia coli K12 in vitro.
Valentin-Hansen P, Hammer-Jespersen K, Buxton RS.
(
231107
)
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| Sequences |
Amino acid
FASTA format
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0001 MKRAFIMVLD SFGIGATEDA ERFGDVGADT LGHIAEACAK GEADNGRKGP LNLPNLTRLG LAKAHEGSTG
0071 FIPAGMDGNA EVIGAYAWAH EMSSGKDTPS GHWEIAGVPV LFEWGYFSDH ENSFPQELLD KLVERANLPG
0141 YLGNCHSSGT VILDQLGEEH MKTGKPIFYT SADSVFQIAC HEETFGLDKL YELCEIAREE LTNGGYNIGR
0211 VIARPFIGDK AGNFQRTGNR HDLAVEPPAP TVLQKLVDEK HGQVVSVGKI ADIYANCGIT KKVKATGLDA
0281 LFDATIKEMK EAGDNTIVFT NFVDFDSSWG HRRDVAGYAA GLELFDRRLP ELMSLLRDDD ILILTADHGC
0351 DPTWTGTDHT REHIPVLVYG PKVKPGSLGH RETFADIGQT LAKYFGTSDM EYGKAMF
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 TAAAGCACCG GAAAGCACAC CAACTGTCTA
-070 TCGCCGTATC AGCGAATAAC GGTATACTGA TCTGATCATT TAAATTTGAA GCACTGAGTA CGGAGAACAT
0001 atgaaacgtg catttattat ggtgctggac tcattcggca tcggcgctac agaagatgca gaacgctttg
0071 gtgacgtcgg ggctgacacc ctgggtcata tcgcagaagc ttgtgccaaa ggcgaagctg ataacggtcg
0141 taaaggcccg ctcaatctgc caaatctgac ccgtctgggg ctggcgaaag cacacgaagg ttctaccggt
0211 ttcattccgg cgggaatgga cggcaacgct gaagttatcg gcgcgtacgc atgggcgcac gaaatgtcat
0281 ccggtaaaga taccccgtct ggtcactggg aaattgccgg tgtcccggtt ctgtttgagt ggggatattt
0351 ctccgatcac gaaaacagct tcccgcaaga gctgctggat aaactggtcg aacgcgctaa tctgccgggt
0421 tacctcggta actgccactc ttccggtacg gtcattctgg atcaactggg cgaagagcac atgaaaaccg
0491 gcaagccgat tttctatacc tccgctgact ccgtgttcca gattgcctgc catgaagaaa ctttcggtct
0561 ggataaactc tacgaactgt gcgaaatcgc ccgtgaagag ctgaccaacg gcggctacaa tatcggtcgt
0631 gttatcgctc gtccgtttat cggcgacaaa gccggtaact tccagcgtac cggtaaccgt cacgacctgg
0701 ctgttgagcc gccagcaccg accgtgctgc agaaactggt tgatgaaaaa cacggccagg tggtttctgt
0771 cggtaaaatt gcggacatct acgccaactg cggtatcacc aaaaaagtga aagcgactgg cctggacgcg
0841 ctgtttgacg ccaccatcaa agagatgaaa gaagcgggtg ataacaccat cgtcttcacc aacttcgttg
0911 acttcgactc ttcctggggc caccgtcgcg acgtcgccgg ttatgccgcg ggtctggaac tgttcgaccg
0981 ccgtctgccg gagctgatgt ctctgctgcg cgatgacgac atcctgatcc tcaccgctga ccacggttgc
1051 gatccgacct ggaccggtac tgaccacacg cgtgaacaca ttccggtact ggtatatggc ccgaaagtaa
1121 aaccgggctc actgggtcat cgtgaaacct tcgcggatat cggccagact ctggcaaaat attttggtac
1191 ttctgatatg gaatatggca aagccatgtt ctgaTGGATT TGGGCGGAGC GTTGACTCCG CCTTTGTTAT
1261 GTCACAAAAA GGATAAAACA ATGGCTACCC CACACATTAA TGCAGAAATG GGCGATTTCG CTGA
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