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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
metB
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Related strains
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Strains Search
|
Search strains by gene name:
metB
Search strains by all related name:
metB b3939 ECK3931 JW3910 met-1
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General information (Go to Linear View: )
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Gene Name
|
metB
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Alternative name
|
b3939,ECK3931,JW3910,met-1
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Location, Length
|
3,506,849 - 3,508,009
(
-
)
;
75.48
min
;
1161
(bp) ,
386
(aa)
|
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Product
|
cystathionine gamma-synthase, PLP-dependent
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Note
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ECK3931:JW3910:b3939
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Function
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PID
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85676121
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
METB_ECOLI
(
P00935
;
Q2M8N5
)
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- Protein name
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RecName: Full=Cystathionine gamma-synthase; Short=CGS; EC=2.5.1.48; AltName: Full=O-succinylhomoserine (thiol)-lyase;
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- Synonyms
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- Gene name
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Name=metB; OrderedLocusNames=b3939, JW3910;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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nr
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BLAST
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cystathionine gamma-synthase, PLP-dependent [Escherichia coli str. K-12 substr. MG1655]
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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MMBR References
|
Mol Gen Genet. 1982;187(1):101-6.
Construction and physical mapping of plasmids containing the metJBLF gene cluster of E. coli K12.
Zakin MM, Greene RC, Dautry-Varsat A, Duchange N, Ferrara P, Py MC, Margarita D, Cohen GN.
(
6219268
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MTRKQATIAV RSGLNDDEQY GCVVPPIHLS STYNFTGFNE PRAHDYSRRG NPTRDVVQRA LAELEGGAGA
0071 VLTNTGMSAI HLVTTVFLKP GDLLVAPHDC YGGSYRLFDS LAKRGCYRVL FVDQGDEQAL RAALAEKPKL
0141 VLVESPSNPL LRVVDIAKIC HLAREVGAVS VVDNTFLSPA LQNPLALGAD LVLHSCTKYL NGHSDVVAGV
0211 VIAKDPDVVT ELAWWANNIG VTGGAFDSYL LLRGLRTLVP RMELAQRNAQ AIVKYLQTQP LVKKLYHPSL
0281 PENQGHEIAA RQQKGFGAML SFELDGDEQT LRRFLGGLSL FTLAESLGGV ESLISHAATM THAGMAPEAR
0351 AAAGISETLL RISTGIEDGE DLIADLENGF RAANKG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgcaaagaag tttagatgtc cagatgtatt
-070 gacgtccatt aacacaatgt ttactctggt gcctgacatt tcaccgacaa agcccaggga acttcatcac
0001 atgacgcgta aacaggccac catcgcagtg cgtagcgggt taaatgacga cgaacagtat ggttgcgttg
0071 tcccaccgat ccatctttcc agcacctata actttaccgg atttaatgaa ccgcgcgcgc atgattactc
0141 gcgtcgcggc aacccaacgc gcgatgtggt tcagcgtgcg ctggcagaac tggaaggtgg tgctggtgca
0211 gtacttacta ataccggcat gtccgcgatt cacctggtaa cgaccgtctt tttgaaacct ggcgatctgc
0281 tggttgcgcc gcacgactgc tacggcggta gctatcgcct gttcgacagt ctggcgaaac gcggttgcta
0351 tcgcgtgttg tttgttgatc aaggcgatga acaggcatta cgggcagcgc tggcagaaaa acccaaactg
0421 gtactggtag aaagcccaag taatccattg ttacgcgtcg tggatattgc gaaaatctgc catctggcaa
0491 gggaagtcgg ggcggtgagc gtggtggata acaccttctt aagcccggca ttacaaaatc cgctggcatt
0561 aggtgccgat ctggtgttgc attcatgcac gaaatatctg aacggtcact cagacgtagt ggccggcgtg
0631 gtgattgcta aagacccgga cgttgtcact gaactggcct ggtgggcaaa caatattggc gtgacgggcg
0701 gcgcgtttga cagctatctg ctgctacgtg ggttgcgaac gctggtgccg cgtatggagc tggcgcagcg
0771 caacgcgcag gcgattgtga aatacctgca aacccagccg ttggtgaaaa aactgtatca cccgtcgttg
0841 ccggaaaatc aggggcatga aattgccgcg cgccagcaaa aaggctttgg cgcaatgttg agttttgaac
0911 tggatggcga tgagcagacg ctgcgtcgtt tcctgggcgg gctgtcgttg tttacgctgg cggaatcatt
0981 agggggagtg gaaagtttaa tctctcacgc cgcaaccatg acacatgcag gcatggcacc agaagcgcgt
1051 gctgccgccg ggatctccga gacgctgctg cgtatctcca ccggtattga agatggcgaa gatttaattg
1121 ccgacctgga aaatggcttc cgggctgcaa acaaggggta aaaatgagtg tgattgcgca ggcaggggcg
1191 aaaggtcgtc agctgcataa atttggtggc agtagtctgg ctgatgtgaa gtgttatttg cgtgtcgcgg
1261 g
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