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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
|
EMBO J. 2001;20(15):4253-62.
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli.
Kato J, Katayama T.
(
11483528
)
|
|
|
Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
hda
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Related strains
|
|
Strains Search
|
Search strains by gene name:
hda
Search strains by all related name:
hda b2496 ECK2492 idaB JW5397 yfgE
|
General information (Go to Linear View: )
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Gene Name
|
hda
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Alternative name
|
b2496,ECK2492,idaB,JW5397,yfgE
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Location, Length
|
2,616,731 - 2,617,477
(
-
)
;
56.32
min
;
747
(bp) ,
248
(aa)
|
|
Product
|
ATPase regulatory factor involved in DnaA inactivation
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Note
|
ECK2492:JW5397:b2496
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Function
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PID
|
85675427
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
HDA_ECOLI
(
P69931
;
P76570; P76979
)
|
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- Protein name
|
RecName: Full=DnaA-homolog protein hda;
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- Synonyms
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- Gene name
|
Name=hda; Synonyms=yfgE; OrderedLocusNames=b2496, JW5397;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
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PSI-BLAST
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SWISS-PROT
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BLAST
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PSI-BLAST
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|
nr
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BLAST
|
DNA replication initiation factor [Escherichia coli O157:H7 EDL933]
|
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Pfam 27.0
(database updated :
2013-03
)
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Pfam
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|
| Sequences |
Amino acid
FASTA format
|
0001 MVNFSRFCEI LVEVSLNTPA QLSLPLYLPD DETFASFWPG DNSSLLAALQ NVLRQEHSGY IYLWAREGAG
0071 RSHLLHAACA ELSQRGDAVG YVPLDKRTWF VPEVLDGMEH LSLVCIDNIE CIAGDELWEM AIFDLYNRIL
0141 ESGKTRLLIT GDRPPRQLNL GLPDLASRLD WGQIYKLQPL SDEDKLQALQ LRARLRGFEL PEDVGRFLLK
0211 RLDREMRTLF MTLDQLDRAS ITAQRKLTIP FVKEILKL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cctgaagaag tggtgctgga cgcagaagac
-070 gcggatataa cagacaaata atgtaccgac cgggcagtgt tgctgcccgg ttcaaacatc atgggattct
0001 gtggtaaact tctcgcgatt ttgtgaaatc ctggttgagg tatctctgaa cacaccggca cagctctctt
0071 tgccacttta tcttcctgac gacgaaacct ttgcaagttt ctggccgggg gataactcct ctttactggc
0141 cgcgctgcaa aacgtgctgc gtcaggaaca tagcggttac atctatctct gggcacgcga aggcgcgggg
0211 cgcagccatc tgctgcacgc ggcttgcgcg gaattgtcgc agcgtggcga tgcggtgggc tatgtcccgc
0281 tggataaacg cacctggttt gttccggaag tgctcgacgg tatggagcat ttgtcgctgg tctgtatcga
0351 caacattgag tgtattgcag gcgatgagtt gtgggagatg gcgattttcg atctctacaa tcgaattctg
0421 gaatcgggca aaacacggtt gttgatcacc ggcgatcgtc caccgcggca gttgaatctg ggattaccgg
0491 atctcgcgtc gcgactcgac tgggggcaga tctacaaatt gcagccactt tctgatgaag ataagttgca
0561 ggcgctacag ttacgcgcgc gtttgcgtgg ttttgaactg ccggaagatg tggggcgttt cttgctgaag
0631 cggctcgaca gagaaatgcg cacgctattt atgacgttgg atcagttgga tcgtgcgtcg attaccgcgc
0701 aacgtaagct gaccattccg tttgtgaaag aaattctgaa gttgtagata aggtgtttat tgtcggatgc
0771 ggcgcgaacg ccttatccga actacgcgaa gttaatccat agtattcgta ggccggataa gacgtggcaa
0841 gcgtcgc
|
