|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rhaR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rhaR
Search strains by all related name:
rhaR b3906 ECK3899 JW3877 rhaC1
|
General information (Go to Linear View: )
|
|
Gene Name
|
rhaR
|
|
Alternative name
|
b3906,ECK3899,JW3877,rhaC1
|
|
Location, Length
|
3,537,187 - 3,538,125
(
-
)
;
76.13
min
;
939
(bp) ,
312
(aa)
|
|
Product
|
DNA-binding transcriptional activator, L-rhamnose-binding
|
|
Note
|
ECK3899:JW3877:b3906
|
|
Function
|
|
|
PID
|
85676153
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RHAR_ECOLI
(
P09378
;
Q2M8K3
)
|
|
- Protein name
|
RecName: Full=HTH-type transcriptional activator rhaR; AltName: Full=L-rhamnose operon transcriptional activator rhaR;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rhaR; Synonyms=rhaC1; OrderedLocusNames=b3906, JW3877;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
DNA-binding transcriptional activator, L-rhamnose-binding [Escherichia coli str. K-12 substr. W3110]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
|
MMBR References
|
Microbiology 1996;142:1833-1840
Transcriptional regulation of the Escherichia coli rhaT gene.
Via, P., J. Badia, L. Baldoma, N. Obradors, and J. Aguilar.
|
| Sequences |
Amino acid
FASTA format
|
0001 MAFCNNANLL NVFVRHIANN QLRSLAEVAT VAHQLKLLKD DFFASDQQAV AVADRYPQDV FAEHTHDFCE
0071 LVIVWRGNGL HVLNDRPYRI TRGDLFYIHA DDKHSYASVN DLVLQNIIYC PERLKLNLDW QGAIPGFNAS
0141 AGQPHWRLGS MGMAQARQVI GQLEHESSQH VPFANEMAEL LFGQLVMLLN RHRYTSDSLP PTSSETLLDK
0211 LITRLAASLK SPFALDKFCD EASCSERVLR QQFRQQTGMT INQYLRQVRV CHAQYLLQHS RLLISDISTE
0281 CGFEDSNYFS VVFTRETGMT PSQWRHLNSQ KD
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gacatcgcct atcgctgtgg attcagcgac
-070 agtaaccact tttcgacgct ttttcgccga gagtttaact ggtcaccgcg tgatattcgc cagggacggg
0001 atggctttct gcaataacgc gaatcttctc aacgtatttg tacgccatat tgcgaataat caacttcgtt
0071 ctctggccga ggtagccacg gtggcgcatc agttaaaact tctcaaagat gatttttttg ccagcgacca
0141 gcaggcagtc gctgtggctg accgttatcc gcaagatgtc tttgctgaac atacacatga tttttgtgag
0211 ctggtgattg tctggcgcgg taatggcctg catgtactca acgatcgccc ttatcgcatt acccgtggcg
0281 atctctttta cattcatgct gacgataaac actcctacgc ttccgttaac gatctggttt tgcagaatat
0351 tatttattgc ccggagcgtc tgaagctgaa tcttgactgg cagggggcga ttccgggatt taacgccagc
0421 gcagggcaac cacactggcg cttaggtagc atggggatgg cgcaggcgcg gcaggttatc ggtcagcttg
0491 agcatgaaag tagtcagcat gtgccgtttg ctaacgaaat ggctgagttg ctgttcgggc agttggtgat
0561 gttgctgaat cgccatcgtt acaccagtga ttcgttgccg ccaacatcca gcgaaacgtt gctggataag
0631 ctgattaccc ggctggcggc tagcctgaaa agtccctttg cgctggataa attttgtgat gaggcatcgt
0701 gcagtgagcg cgttttgcgt cagcaatttc gccagcagac tggaatgacc atcaatcaat atctgcgaca
0771 ggtcagagtg tgtcatgcgc aatatcttct ccagcatagc cgcctgttaa tcagtgatat ttcgaccgaa
0841 tgtggctttg aagatagtaa ctatttttcg gtggtgttta cccgggaaac cgggatgacg cccagccagt
0911 ggcgtcatct caattcgcag aaagattaat tcgccatgcc gatgccgacg atgttagcgg cgacaataat
0981 caccacacaa ccgaggctca acaccgttac cggacggcgt cctgcattgt tccactctt
|
