|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
oppD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
oppD
Search strains by all related name:
oppD b1246 ECK1240 JW1238
|
General information (Go to Linear View: )
|
|
Gene Name
|
oppD
|
|
Alternative name
|
b1246,ECK1240,JW1238
|
|
Location, Length
|
1,306,468 - 1,307,481
(
+
)
;
28.12
min
;
1014
(bp) ,
337
(aa)
|
|
Product
|
oligopeptide transporter subunit
|
|
Note
|
ATP-binding component of ABC superfamily; ECK1240:JW1238:b1246
|
|
Function
|
|
|
PID
|
1742035
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
OPPD_ECOLI
(
P76027
;
P77382
)
|
|
- Protein name
|
RecName: Full=Oligopeptide transport ATP-binding protein oppD;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=oppD; OrderedLocusNames=b1246, JW1238;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
oligopeptide transporter subunit [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE TLGIVGESGS GKSQTAFALM
0071 GLLAANGRIG GSATFNGREI LNLPEHELNK LRAEQISMIF QDPMTSLNPY MRVGEQLMEV LMLHKNMSKA
0141 EAFEESVRML DAVKMPEARK RMKMYPHEFS GGMRQRVMIA MALLCRPKLL IADEPTTALD VTVQAQIMTL
0211 LNELKREFNT AIIMITHDLV VVAGICDKVL VMYAGRTMEY GNARDVFYQP VHPYSIGLLN AVPRLDAEGE
0281 TMLTIPGNPP NLLRLPKGCP FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCCCAGCGGG ATTCCTCGTG GTGACGCTGT
-070 TTTGTTTCAA CTTTATCGGC GATGGCTTGC GTGATGCCCT CGACCCGAAA GATCGTTAAG GAGTGCAGCC
0001 atgagcgtaa ttgaaactgc aactgtgccg ctcgcacaac aacaggctga cgcactgctg aacgtgaaag
0071 atttgcgtgt cacctttagt accccggacg gcgacgtcac ggcggtcaat gatttgaatt tttccctacg
0141 tgccggagaa acgctgggta ttgtaggtga gtctggttcg ggtaaatcgc aaactgcatt tgcgttgatg
0211 ggcctgttgg ctgccaacgg acgtattggc ggatcggcaa ccttcaatgg gcgtgaaatc ctcaatttgc
0281 cagagcatga actcaataaa ctgcgcgctg aacaaatctc aatgattttt caggacccaa tgacttcgtt
0351 gaatccctat atgcgcgtcg gtgagcagtt gatggaagtg ctgatgctgc ataagaacat gagcaaagct
0421 gaggcgtttg aagagtcggt gcggatgctc gatgcggtaa aaatgccgga agcgcgtaaa cgcatgaaaa
0491 tgtacccgca cgaattttct ggcggcatgc gtcagcgagt catgattgcg atggccttgt tatgtcgacc
0561 taagctgctg attgcggatg aaccaacaac tgcgctggac gtcaccgtac aggcgcagat catgacgcta
0631 ttaaatgaac tgaagcggga atttaatacc gccatcatta tgatcaccca cgatcttgtc gtggtggcgg
0701 ggatctgcga caaagtgctg gtaatgtacg ccgggcgcac gatggaatat ggcaacgcgc gcgatgtctt
0771 ttatcaaccc gttcatcctt attctatcgg tttgctcaac gcggtgccgc gtctcgatgc ggaaggtgaa
0841 acaatgttga ccatcccggg taatccgcca aacctgctgc gattaccgaa aggttgcccg ttccagccac
0911 gttgtccgca tgcgatggaa atttgtagta gcgcaccgcc gctggaagag tttacgcctg gccgtctgcg
0981 tgcttgcttt aaaccggtgg aggaactgtt atgaATGCTG TAACTGAAGG AAGAAAAGTC CTCCTTGAAA
1051 TCGCCGATCT TAAAGTGCAC TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAA
|
