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PEC Original Annotations
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Essentiality
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Class
|
non-essential
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References (PMID)
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|
|
Related gene (MG1655 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
sdhD
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
sdhD
Search strains by all related name:
sdhD b0722 ECK0711 JW0712
|
General information (Go to Linear View: )
|
|
Gene Name
|
sdhD
|
|
Alternative name
|
b0722,ECK0711,JW0712
|
|
Location, Length
|
755,982 - 756,329
(
+
)
;
16.27
min
;
348
(bp) ,
115
(aa)
|
|
Product
|
succinate dehydrogenase, membrane subunit, binds cytochrome b556
|
|
Note
|
ECK0711:JW0712:b0722
|
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Function
|
|
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PID
|
1651318
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
DHSD_ECOLI
(
P0AC44
;
P10445
)
|
|
- Protein name
|
RecName: Full=Succinate dehydrogenase hydrophobic membrane anchor subunit;
|
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- Synonyms
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- Gene name
|
Name=sdhD; OrderedLocusNames=b0722, JW0712;
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Homology Analysis
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BLAST
|
|
Bacteria
|
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GTOP
|
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PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
|
MMBR References
|
J Bacteriol. 1991;173(5):1569-70.
E. coli map. Physical map locations of genes encoding components of the aerobic respiratory chain of Escherichia coli.
Calhoun MW, Newton G, Gennis RB.
(
1847904
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MVSNASALGR NGVHDFILVR ATAIVLTLYI IYMVGFFATS GELTYEVWIG FFASAFTKVF TLLALFSILI
0071 HAWIGMWQVL TDYVKPLALR LMLQLVIVVA LVVYVIYGFV VVWGV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATTTTGGCTA TCTGGAAGAA ACATTCGAAG
-070 CGGGTAAACG CTCCGCCAAA ATCTCCTTTG TTATTACTGT CGTGCTTTCA CTTCTCGCAG GAGTCCTCGT
0001 atggtaagca acgcctccgc attaggacgc aatggcgtac atgatttcat cctcgttcgc gctaccgcta
0071 tcgtcctgac gctctacatc atttatatgg tcggtttttt cgctaccagt ggcgagctga catatgaagt
0141 ctggatcggt ttcttcgcct ctgcgttcac caaagtgttc accctgctgg cgctgttttc tatcttgatc
0211 catgcctgga tcggcatgtg gcaggtgttg accgactacg ttaaaccgct ggctttgcgc ctgatgctgc
0281 aactggtgat tgtcgttgca ctggtggttt acgtgattta tggattcgtt gtggtgtggg gtgtgtgaTG
0351 AAATTGCCAG TCAGAGAATT TGATGCAGTT GTGATTGGTG CCGGTGGCGC AGGTATGCGC GCGGCGCTGC
0421 AAATTTCCCA GAGCGGCCAG ACCTGTGC
|
