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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
caiT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
caiT
Search strains by all related name:
caiT b0040 ECK0041 JW0039 yaaP
|
General information (Go to Linear View: )
|
|
Gene Name
|
caiT
|
|
Alternative name
|
b0040,ECK0041,JW0039,yaaP
|
|
Location, Length
|
40,417 - 41,931
(
-
)
;
0.87
min
;
1515
(bp) ,
504
(aa)
|
|
Product
|
predicted transporter
|
|
Note
|
ECK0041:JW0039:b0040
|
|
Function
|
|
|
PID
|
85674295
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
CAIT_ECOLI
(
P31553
;
P75624; Q6IU45
)
|
|
- Protein name
|
RecName: Full=L-carnitine/gamma-butyrobetaine antiporter;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=caiT; Synonyms=yaaP; OrderedLocusNames=b0040, JW0039;
|
|
- Comments
|
FUNCTION:Catalyzes the exchange of L-carnitine for gamma-butyrobetaine and related betaines.
PATHWAY:Amine and polyamine metabolism; carnitine metabolism.
SUBCELLULAR LOCATION:Cell inner membrane; Multi-pass membrane protein.
SIMILARITY:Belongs to the BCCT transporter (TC 2.A.15) family. CaiT subfamily.
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
predicted transporter [Escherichia coli str. K-12 substr. MG1655]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MKNEKRKTGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV VMLFGWFWLV
0071 FGPYAKKRLG NEPPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP FGLEPNSTGA KELGLAYSLF
0141 HWGPLPWATY SFLSVAFAYF FFVRKMEVIR PSSTLVPLVG EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL
0211 ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS
0281 FIMNYFTDSV GMLLMYLPRM LFYTDPIAKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG
0351 MVLGLTASTW ILWTVLGSNT LLLIDKNIIN IPNLIEQYGV ARAIIETWAA LPLSTATMWG FFILCFIATV
0421 TLVNACSYTL AMSTCREVRD GEEPPLLVRI GWSILVGIIG IVLLALGGLK PIQTAIIAGG CPLFFVNIMV
0491 TLSFIKDAKQ NWKD
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aacgcgtcca cgaggttaat aataattata
-070 ttaaatgtta acaaaaataa aacaaacggg aacgcaaaat aaatattcgt tttcacagtg gaattaactc
0001 atgaagaatg aaaagagaaa aacgggaata gaaccgaagg ttttctttcc gccgttaata atcgtcggca
0071 tactttgttg gcttacagtc agagatctgg atgcagcgaa tgtcgttatt aatgctgtat tcagttacgt
0141 caccaatgta tggggatggg catttgaatg gtatatggtg gtgatgcttt tcggttggtt ctggctggtg
0211 tttggcccgt atgccaaaaa gcgtttaggt aacgaaccgc cagaatttag caccgccagt tggatcttta
0281 tgatgttcgc ctcctgtacg tctgctgccg tactgttctg gggatcgatt gagatctact actacatctc
0351 caccccgccg tttggcttag aaccgaactc gacaggggcg aaagagttgg ggctggctta cagcttgttc
0421 cactggggac ctctgccgtg ggccacttac agcttccttt cagtcgcctt cgcttacttc ttctttgtcc
0491 gcaaaatgga agtgattcgc cccagctcga cactggtgcc gctggtaggt gaaaaacacg ccaaagggtt
0561 gttcggcact atcgtcgaca acttctatct cgtcgccttg atcttcgcga tgggtaccag tctgggcctt
0631 gccacgccgc tggtgaccga gtgtatgcaa tggttgtttg gcattccgca taccctgcaa ctggacgcta
0701 tcatcattac ctgctggatt atcctcaacg ccatttgcgt cgcttgcggt ctgcaaaaag gggtacgtat
0771 cgccagtgac gtgcgtagtt acctgagctt cctgatgctg ggttgggtgt tcattgtcag cggtgccagc
0841 ttcatcatga actacttcac cgattcggtg gggatgttgc tgatgtatct gccgcgcatg ttgttctata
0911 ccgatcccat cgctaaaggc ggcttcccgc agggctggac cgtgttctac tgggcatggt gggtgattta
0981 tgctatccag atgagtatct tcctcgcccg catctcccgt ggtcgtactg tgcgtgaact gtgcttcggc
1051 atggtgctgg ggctgacagc gtcaacctgg atcctgtgga ctgtactcgg tagtaacact ctgctgttga
1121 tagataaaaa catcatcaac attccaaatc tgatcgaaca gtacggtgtg gcgcgcgcca tcattgaaac
1191 ctgggccgct ctgccactca gcaccgccac catgtggggc ttcttcatcc tctgctttat tgccaccgtt
1261 acgctggtta acgcctgctc ttataccctg gcgatgtcca cttgccgcga agtacgcgat ggtgaagaac
1331 cacctctgct ggtgcgtatc ggttggtcaa ttctggttgg cattatcggt attgttctgc tggcgctcgg
1401 cggcctgaaa ccgattcaaa ccgccattat cgccggagga tgcccgctgt tcttcgtcaa cattatggtg
1471 acgctctcct ttattaaaga cgcgaaacag aactggaaag attaattaac ccccaaaata tcaagaggtt
1541 gaaagatgga ttttaattta aatgatgagc aggaactgtt tgtcgccggt atccgcgaac tgatggccag
1611 cgaaa
|
