|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
essential
|
|
References (PMID)
|
|
|
Related gene (MG1655 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
secF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
secF
Search strains by all related name:
secF b0409 ECK0403 JW0399
|
General information (Go to Linear View: )
|
|
Gene Name
|
secF
|
|
Alternative name
|
b0409,ECK0403,JW0399
|
|
Location, Length
|
428,729 - 429,700
(
+
)
;
9.23
min
;
972
(bp) ,
323
(aa)
|
|
Product
|
SecYEG protein translocase auxillary subunit
|
|
Note
|
ECK0403:JW0399:b0409
|
|
Function
|
|
|
PID
|
85674549
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
SECF_ECOLI
(
P0AG93
;
P19674; P77113; Q2MC17
)
|
|
- Protein name
|
RecName: Full=Protein-export membrane protein secF;
|
|
- Synonyms
|
|
|
- Gene name
|
Name=secF; OrderedLocusNames=b0409, JW0399;
|
|
- Comments
|
FUNCTION:Involved in protein export.
SUBUNIT:Part of the prokaryotic protein translocation apparatus which comprise secA, secB, secD, secE, secF, secG and secY.
SUBCELLULAR LOCATION:Cell inner membrane; Multi-pass membrane protein.
SIMILARITY:Belongs to the secD/secF family. SecF subfamily.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
|
|
PSI-BLAST
|
|
|
SWISS-PROT
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
|
|
BLAST
|
preprotein translocase subunit SecF [Escherichia coli UTI89]
|
|
Pfam 27.0
(database updated :
2013-03
)
|
|
Pfam
|
|
|
MMBR References
|
J Bacteriol. 1995;177:4969-4973
Multicopy suppression of cold-sensitive sec mutations in Escherichia coli.
Danese, P. N., C. K. Murphy, and T. J. Silhavy.
|
| Sequences |
Amino acid
FASTA format
|
0001 MAQEYTVEQL NHGRKVYDFM RWDYWAFGIS GLLLIAAIVI MGVRGFNWGL DFTGGTVIEI TLEKPAEIDV
0071 MRDALQKAGF EEPMLQNFGS SHDIMVRMPP AEGETGGQVL GSQVLKVINE STNQNAAVKR IEFVGPSVGA
0141 DLAQTGAMAL MAALLSILVY VGFRFEWRLA AGVVIALAHD VIITLGILSL FHIEIDLTIV ASLMSVIGYS
0211 LNDSIVVSDR IRENFRKIRR GTPYEIFNVS LTQTLHRTLI TSGTTLMVIL MLYLFGGPVL EGFSLTMLIG
0281 VSIGTASSIY VASALALKLG MKREHMLQQK VEKEGADQPS ILP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCGACGTCGA TGTTTACCGC GATTGTCGGT
-070 ACGCGTGCCA TCGTAAACCT GCTATATGGC GGCAAGCGCG TCAAGAAGCT GTCAATCTGA GGAGTGCGAT
0001 gtggcacagg aatatactgt tgaacaacta aaccacggcc gtaaagtcta tgactttatg cgctgggact
0071 actgggcttt cggcatctct ggtctgctgt taatcgctgc tatcgttatt atgggcgtgc gcggctttaa
0141 ctgggggctg gatttcaccg gtggtacggt tattgaaatt acgctcgaaa aaccggctga aattgacgta
0211 atgcgtgatg cattgcaaaa agccggtttt gaagagccga tgctgcaaaa ctttggtagc agccatgaca
0281 tcatggtccg tatgccgcct gctgaaggcg aaaccggcgg tcaggtgttg ggcagccagg ttctgaaggt
0351 gattaacgaa tccaccaatc agaatgcagc agtgaagcgt attgagttcg tcggtccgag cgtgggggca
0421 gaccttgcgc aaaccggtgc gatggcgttg atggcagcgc tgctgtctat cctcgtgtac gtaggtttcc
0491 gctttgagtg gcgactggcg gcaggggtgg ttattgcgct ggcgcacgac gttatcatta cgctgggtat
0561 tttgtcgtta ttccatatcg agattgacct gaccattgtg gcatcgttga tgtcggttat cggttactcg
0631 cttaacgaca gtatcgtggt atcggaccgt attcgtgaaa acttccgcaa gatccgtcgc ggtacgcctt
0701 acgaaatctt taacgtgtcc ttgacccaga cgctgcaccg taccttgatc acatccggta ctaccttgat
0771 ggttatcctg atgctgtacc tcttcggtgg tccggtactg gaaggcttct cgctgaccat gcttatcggt
0841 gtttccatcg gtactgcatc ttccatctat gtggcatctg cgttggctct gaaactgggt atgaagcgcg
0911 aacacatgtt gcagcagaaa gtggaaaaag aaggggcgga tcagccgtca attctgccgt aaTCAAGTTC
0981 CCGTTGATGT TGAAAATCCC GGTCAGAAGA TCGGGATTTT TTTTGATGTA TGGAGATTGC GAAAATCCCC
1051 GCATCTTGGG AAACTGCGCG TA
|
