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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Microbiology. 1998;144 (Pt 12):3297-308.
A factor produced by Escherichia coli K-12 inhibits the growth of E. coli mutants defective in the cytochrome bd quinol oxidase complex: enterochelin rediscovered.
Cook GM, Loder C, Soballe B, Stafford GP, Membrillo-Hernandez J, Poole RK.
(
9884221
)
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Deletion
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OCR50
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
cydD
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Related strains
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Strains Search
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Search strains by gene name:
cydD
Search strains by all related name:
cydD b0887 ECK0878 htrD JW0870
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General information (Go to Linear View: )
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Gene Name
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cydD
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Alternative name
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b0887,ECK0878,htrD,JW0870
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Location, Length
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928,419 - 930,185
(
-
)
;
20.01
min
;
1767
(bp) ,
588
(aa)
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Product
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fused glutathione, cysteine exporter subunits ofABC superfamily: membrane component/ATP-binding component
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Operon Name
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cydDC
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Note
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ATP-binding component of cytochrome-related transport, Zn sensitive; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
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Function
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transport; Not classified
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Gene Ontology
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GO:0000166
;
nucleotide binding ( cydD )
GO:0005524
;
ATP binding ( cydD )
GO:0005886
;
plasma membrane ( cydD )
GO:0006810
;
transport ( cydD )
GO:0016020
;
membrane ( cydD )
GO:0016021
;
integral to membrane ( cydD )
GO:0016887
;
ATPase activity ( cydD )
GO:0017111
;
nucleoside-triphosphatase activity ( cydD )
GO:0042626
;
ATPase activity, coupled to transmembrane movement of substances ( cydD )
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PID
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1787113
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
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CYDD_ECOLI
(
P29018
;
P77275; Q47656
)
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- Protein name
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Transport ATP-binding protein cydD.
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- Synonyms
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- Gene name
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Name=cydD; Synonyms=htrD; OrderedLocusNames=b0887;
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MMBR References
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J Bacteriol. 1992;174(11):3824-5.
Physical map locations of the trxB, htrD, cydC, and cydD genes of Escherichia coli.
Delaney JM, Georgopoulos C.
(
1317384
)
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J Bacteriol. 1996;178:6348-6351
The temperature-sensitive growth and survival phenotypes of Escherichia coli cydDC and cydAB strains are due to deficiencies in cytochrome bd and are corrected by exogenous catalase and reducing agents.
Goldman, B. S., K. K. Gabbert, and R. G. Kranz.
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FEMS Microbiol Lett. 1993;112(1):19-24.
Investigation of the role of the cydD gene product in production of a functional cytochrome d oxidase in Escherichia coli.
Bebbington KJ, Williams HD.
(
8405944
)
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FEMS Microbiol Lett. 1994;117(2):217-23.
The cydD gene product, component of a heterodimeric ABC transporter, is required for assembly of periplasmic cytochrome c and of cytochrome bd in Escherichia coli.
Poole RK, Gibson F, Wu G.
(
8181727
)
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J Gen Microbiol. 1989;135(7):1865-74.
Mutations affecting the cytochrome d-containing oxidase complex of Escherichia coli K12: identification and mapping of a fourth locus, cydD.
Poole RK, Williams HD, Downie JA, Gibson F.
(
2559153
)
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Mol Microbiol. 1993;10(2):421-30.
Cytochrome bd biosynthesis in Escherichia coli: the sequences of the cydC and cydD genes suggest that they encode the components of an ABC membrane transporter.
Poole RK, Hatch L, Cleeter MW, Gibson F, Cox GB, Wu G.
(
7934832
)
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| Sequences |
Amino acid
FASTA format
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0001 MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE ALLLPFTLLV
0071 LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG SWATLVLEQI DDMHDYYARY
0141 LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM ALVGMGAADA NRRNFLALAR LSGHFLDRLR
0211 GMETLRIFGR GEAEIESIRS ASEDFRQRTM EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH
0281 YDTGVTLAAG FLALILAPEF FQPLRDLGTF YHAKAQAVGA ADSLKTFMET PLAHPQRGEA ELASTDPVTI
0351 EAEELFITSP EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES
0421 WRKHLSWVGQ NPQLPAATLR DNVLLARPDA SEQELQAALD NAWVSEFLPL LPQGVDTPVG DQAARLSVGQ
0491 AQRVAVARAL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV THQLEDLADW DVIWVMQDGR
0561 IIEQGRYAEL SVAGGPFATL LAHRQEEI
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 taaagaaggc gacaccatgc gactatgggt
-070 cgcctttatt ttttccccgt tgtaacattg ctctgcaaat aattctgata actcacctgc taagcgtgca
0001 atgaataaat ctcgtcaaaa agagttaacc cgctggttaa aacagcaaag cgtcatctcc caacgttggc
0071 tgaatatttc tcgtctgctg ggctttgtga gcggcatatt gatcattgcc caggcctggt tcatggcgcg
0141 aattctgcaa catatgatta tggagaatat tccccgtgaa gccctgctgc ttccctttac gttactggtt
0211 ctgacctttg tactgcgcgc atgggtggtc tggttacgcg aacgggtggg ttatcacgcc gggcagcata
0281 tccgctttgc catccgccgt caggttctcg accgtctgca acaagcaggg ccagcgtgga ttcagggtaa
0351 acctgcgggg agctgggcga cgctggtact cgagcaaatt gacgatatgc atgattacta tgcacgctat
0421 ctgccgcaaa tggcgctggc agtgtcggtg ccgttgctga ttgtggtggc aatcttcccc tctaactggg
0491 ctgcggcgct cattctgctg ggcactgcac cgttaattcc gttgtttatg gcgctggttg gaatgggggc
0561 tgccgatgct aaccgacgta actttctcgc tcttgctcgc ttaagtgggc atttcctcga tcgcctgcgc
0631 ggcatggaaa cattgcgtat ttttggtcgt ggtgaagctg aaattgaaag tattcgttct gcttcggaag
0701 atttccgcca acggacaatg gaagtgctac ggctggcgtt tttatcctcc ggcattctcg aattttttac
0771 ctcgctgtca attgctctgg tggcggtcta ctttggtttt tcctatctcg gcgagctgga ttttggtcac
0841 tacgataccg gtgtgacgct ggctgcgggt tttctggccc tgatccttgc gccagagttt ttccagccat
0911 tacgcgatct cggtacgttt tatcatgcta aagcccaggc tgttggcgca gctgacagtc tgaaaacgtt
0981 tatggaaacc ccgctcgccc atccgcaacg tggtgaggcg gaattagcat cgaccgatcc ggtgaccatt
1051 gaggccgagg agctgtttat cacgtcgccg gaaggtaaaa cgctggccgg accgctgaac tttactttgc
1121 cagcaggcca acgtgcggtg ttggttggtc gcagcggttc aggtaaaagc tcactgctga acgcgctttc
1191 tggttttctc tcatatcagg gatcgctacg aatcaacggg atagaattac gcgatttatc accagaatca
1261 tggcgtaaac atctctcctg ggttgggcaa aacccacaat taccggcagc aacattgcgg gataacgtac
1331 tactggcgcg acctgatgcc agcgaacaag aattacaagc agcgctggat aacgcctggg tcagcgagtt
1401 tctaccgctc ctcccacaag gcgttgatac gcctgttggc gaccaggctg cccgcctttc cgtggggcag
1471 gcgcagcgcg tggcggtggc ccgtgcgtta ctaaatccct gttcgctatt actgttggat gaacccgctg
1541 ccagccttga tgctcacagt gaacagcgcg taatggaggc gctgaatgcc gcctctctgc gccagacaac
1611 gttaatggtc acccaccagt tagaagatct tgctgactgg gatgtcattt gggttatgca ggatggccgg
1681 attattgagc aaggacgtta cgcggaatta agtgtggctg gtggcccatt cgccacatta ctggcccatc
1751 gtcaggagga gatttaaatg cgcgctttgc taccctatct ggcactgtat aaacgtcata aatggatgtt
1821 aagtcttggt attgtgctgg caattgtgac gctgctcgcc agtatcg
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