|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
15
(LD)
,
15+dps
(LD)
,
OCR48,50-8 (LD 15D::Cm)
(D)
,
OCR49
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
potH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
potH
Search strains by all related name:
potH b0856 ECK0847 JW0840
|
General information (Go to Linear View: )
|
|
Gene Name
|
potH
|
|
Alternative name
|
b0856,ECK0847,JW0840
|
|
Location, Length
|
895,357 - 896,310
(
+
)
;
19.30
min
;
954
(bp) ,
317
(aa)
|
|
Product
|
putrescine transporter subunit: membrane component of ABC superfamily
|
|
Operon Name
|
potFGHI
|
|
Note
|
putrescine transport protein; permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006596 - polyamine biosynthetic process; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0015847 - putrescine transport
|
|
Function
|
transport; Transport of small molecules: Amino acids, amines
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( potH )
GO:0005886
;
plasma membrane ( potH )
GO:0006810
;
transport ( potH )
GO:0016020
;
membrane ( potH )
GO:0016021
;
integral to membrane ( potH )
|
|
PID
|
1787080
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
POTH_ECOLI
(
P31135
)
|
|
- Protein name
|
Putrescine transport system permease protein potH.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=potH; OrderedLocusNames=b0856;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
potH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putrescine transport system permease protein potH
|
|
PSI-BLAST
|
Putrescine transport system permease protein potH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putrescine transporter subunit: membrane component of ABC superfamily [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
LEUCINE_ZIPPER
CARBOXYPEPT_ZN_2
BPD_TRANSP_INN_MEMBR
|
|
MMBR References
|
J Biol Chem. 1993;268:146-152
Characteristics of the operon for a putrescine transport system that maps at 19 minutes on the Escherichia coli chromosome.
Pistocchi, R., K. Kashiwagi, S. Miyamoto, E. Nukui, H. Kobayashi, and K. Igarashi.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSTLEPAAQS KPPGGFKLWL SQLQMKHGRK LVIALPYIWL ILLFLLPFLI VFKISLAEMA RAIPPYTELM
0071 EWADGQLSIT LNLGNFLQLT DDPLYFDAYL QSLQVAAIST FCCLLIGYPL AWAVAHSKPS TRNILLLLVI
0141 LPSWTSFLIR VYAWMGILKN NGVLNNFLLW LGVIDQPLTI LHTNLAVYIG IVYAYVPFMV LPIYTALIRI
0211 DYSLVEAALD LGARPLKTFF TVIVPLTKGG IIAGSMLVFI PAVGEFVIPE LLGGPDSIMI GRVLWQEFFN
0281 NRDWPVASAV AIIMLLLLIV PIMWFHKHQQ KSVGEHG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGCCCATCGT CATCGTAAAG GGTTACCGAC
-070 CTGGGGCGAC GAAGTGCGTT TGTGCTGGGA AGTGGACAGC TGTGTGGTGC TGACGGTTTA AGGAGCAAAG
0001 atgagtacac ttgaacctgc tgcccagtcg aaaccgccgg gcggatttaa gctgtggttg tcgcagctgc
0071 aaatgaagca tgggcgcaaa ctggtcattg cgttgccata tatctggttg atcttgctgt ttctgctgcc
0141 atttctgatt gtctttaaaa taagcctggc ggagatggcg cgcgctattc caccttatac cgaactgatg
0211 gagtgggctg acgggcaact gtccatcact cttaatctcg gtaattttct gcaactgacc gacgatccgc
0281 tctatttcga tgcttatctc cagtcgctac aggtggctgc gatttcgaca ttttgctgtt tactgatcgg
0351 ctatccgctg gcgtgggcgg tggcgcacag taagccttcg acccgtaata ttttattact actggtgatc
0421 ctgccgtcgt ggacctcgtt tctgatccgc gtttatgcct ggatgggaat attaaaaaac aacggtgtgc
0491 tgaataattt tctgctgtgg ctgggggtta tcgatcaacc gctgaccatt ctgcatacca atctggccgt
0561 ttatatcggc attgtttacg cttacgtgcc gtttatggta ctgccgattt ataccgcgtt gattcgtatt
0631 gattattcgc tggtggaagc agcgctggat ctcggtgcac gaccgctgaa aacgttcttt actgtgatcg
0701 tgccgctgac taaaggtggg attattgccg gatcgatgct ggtgtttatc ccggctgtgg gcgagtttgt
0771 gatcccggaa ctgctcggtg gcccggacag catcatgatc gggcgcgtgc tatggcaaga gtttttcaat
0841 aaccgcgact ggccggtggc ctcggcggta gcgatcatca tgttgctgct gctaattgtg ccgataatgt
0911 ggttccacaa acaccagcaa aaaagcgtgg gagaacacgg atgaATAATT TACCGGTAGT TCGTTCGCCC
0981 TGGCGGATTG TGATTTTGCT GCTGGGCTTT ACCTTTCTCT ACGCGCCAAT GCTGATGCTG GTTATCTATT
1051 CGTT
|
