|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
15
(LD)
,
DE(pgl-grxA)502
,
15+dps
(LD)
,
OCR48,50-8 (LD 15D::Cm)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybiB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybiB
Search strains by all related name:
ybiB b0800 ECK0789 JW0785
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybiB
|
|
Alternative name
|
b0800,ECK0789,JW0785
|
|
Location, Length
|
834,471 - 835,433
(
+
)
;
17.99
min
;
963
(bp) ,
320
(aa)
|
|
Product
|
putative family 3 glycosyltransferase
|
|
Operon Name
|
ybiB
|
|
Note
|
putative enzyme
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0008152
;
metabolic process ( ybiB )
GO:0016740
;
transferase activity ( ybiB )
GO:0016757
;
transferase activity, transferring glycosyl groups ( ybiB )
|
|
PID
|
1787019
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
YBIB_ECOLI
(
P30177
)
|
|
- Protein name
|
Hypothetical protein ybiB.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybiB; OrderedLocusNames=b0800;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybiB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ybiB
|
|
PSI-BLAST
|
Anthranilate phosphoribosyltransferase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0800 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MDYRKIIKEI GRGKNHARDL DRDTARGLYA HMLNGEVPDL ELGGVLIALR IKGEGEAEML GFYEAMQNHT
0071 IKLTPPAGKP MPIVIPSYNG ARKQANLTPL LAILLHKLGF PVVVHGVSED PTRVLTETIF ELMGITPTLH
0141 GGQAQAKLDE HQPVFMPVGA FCPPLEKQLA MRWRMGVRNS AHTLAKLATP FAEGEALRLS SVSHPEYIGR
0211 VAKFFSDIGG RALLMHGTEG EVYANPQRCP QINLIDREGM RVLYEKQDTA GSELLPQAKD PETTAQWIER
0281 CLAGSEPIPE SLKIQMACCL VATGEAATIS DGLARVNQAF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCAACCGGAA GTCCCTGAAG GTATAGTTAA
-070 AAAGAAAGAA AAAACGAAAT CCCCACGCCG TCGGCGGCGT TAATGATGTG AGTCAGGTAA GGAGTCGTAA
0001 atggactatc gcaaaatcat taaagagatc gggcgcggga aaaaccacgc gcgcgattta gaccgggata
0071 ctgcgcgcgg tctgtatgct catatgctca atggtgaagt ccctgacctt gagttgggcg gcgtattgat
0141 tgcgctgcgt atcaaaggag aaggggaagc agagatgctc ggcttttacg aagccatgca aaatcacacc
0211 atcaagctga cgccgccagc aggcaagccg atgccgattg tcatccccag ttacaacggc gcgcgtaaac
0281 aggccaacct gacgccgttg ttggcgattc tcctgcacaa actcggtttt cctgtggtgg ttcacggggt
0351 tagcgaagat ccaacccgcg tgctgactga aaccattttt gaattgatgg gtattacgcc aacgttgcac
0421 ggcgggcagg cgcaggcgaa gctcgacgaa catcaaccgg tgtttatgcc agtcggcgcg ttttgcccgc
0491 cgctggaaaa acaactggcg atgcgctggc ggatgggcgt gcgtaacagt gcacataccc tggcgaaact
0561 ggcgacgcca tttgccgaag gtgaggcgct gcgtctttcc agcgtttcgc atccggaata cattggacgc
0631 gtcgcgaagt tctttagcga tatcggcggg cgggcgctac taatgcatgg tactgaaggt gaagtgtatg
0701 ctaatccgca gcgctgcccg cagatcaatc tcattgaccg tgaagggatg cgggtgctgt atgaaaaaca
0771 ggacactgct ggtagcgagt tactgccaca agcaaaagat ccggaaacca cggcgcagtg gattgagcgt
0841 tgccttgctg gcagcgaacc gattcccgaa tcgctgaaaa tccagatggc ttgctgcctg gtggctacgg
0911 gtgaagcggc aactatcagc gacggcctgg cgcgcgttaa tcaggcattt taaTTCTTTT CTCAGCCGGA
0981 TGAGCCATGT CATCCGGCTT TTACCCCACC GCAATATGAA ATTCCTGCAT CTTTATTGAC CTTCCCACGC
1051 CCGGCGTGCA GCA
|
