|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42
(D)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybbO
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybbO
Search strains by all related name:
ybbO b0493 ECK0487 f269 JW0482
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybbO
|
|
Alternative name
|
b0493,ECK0487,f269,JW0482
|
|
Location, Length
|
517,564 - 518,373
(
-
)
;
11.16
min
;
810
(bp) ,
269
(aa)
|
|
Product
|
putative oxidoreductase with NAD(P)-binding Rossmann-fold domain
|
|
Operon Name
|
tesA-ybbO
|
|
Note
|
putative oxidoreductase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( ybbO )
GO:0005488
;
binding ( ybbO )
GO:0008152
;
metabolic process ( ybbO )
GO:0016491
;
oxidoreductase activity ( ybbO )
|
|
PID
|
1786701
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YBBO_ECOLI
(
P77388
)
|
|
- Protein name
|
Hypothetical oxidoreductase ybbO
|
|
- Synonyms
|
EC 1.-.-.-
|
|
- Gene name
|
Name=ybbO; OrderedLocusNames=b0493, c0614;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybbO
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Tropinone Reductase-I Complex With Nadp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical oxidoreductase ybbO
|
|
PSI-BLAST
|
3-oxoacyl-[acyl-carrier-protein] reductase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
short chain dehydrogenase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ADH_SHORT
|
| Sequences |
Amino acid
FASTA format
|
0001 MTHKATEILT GKVMQKSVLI TGCSSGIGLE SALELKRQGF HVLAGCRKPD DVERMNSMGF TGVLIDLDSP
0071 ESVDRAADEV IALTDNCLYG IFNNAGFGMY GPLSTISRAQ MEQQFSANFF GAHQLTMRLL PAMLPHGEGR
0141 IVMTSSVMGL ISTPGRGAYA ASKYALEAWS DALRMELRHS GIKVSLIEPG PIRTRFTDNV NQTQSDKPVE
0211 NPGIAARFTL GPEAVVDKVR HAFISEKPKM RYPVTLVTWA VMVLKRLLPG RVMDKILQG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aagccacaat ggatgcagga tgacggtatt
-070 catcccaacc gcgacgccca gccgtttatt gccgactgga tggcgaagca gttgcagcct ttagtaaatc
0001 atgactcata aagcaacgga gatcctgaca ggtaaagtta tgcaaaaatc ggtcttaatt accggatgtt
0071 ccagtggaat tggcctggaa agcgcgctcg aattaaaacg ccagggtttt catgtgctgg caggttgccg
0141 gaaaccggat gatgttgagc gcatgaacag catgggattt accggcgtgt tgatcgatct ggattcacca
0211 gaaagtgttg atcgcgcagc cgacgaggtg atcgccctga ccgataattg tctgtatggg atctttaaca
0281 atgccggatt cggcatgtat ggcccccttt ccaccatcag ccgtgcgcag atggaacagc agttttccgc
0351 caactttttc ggcgcacacc agctcaccat gcgcctgtta cccgcgatgt taccgcacgg tgaagggcgt
0421 attgtgatga catcatcggt gatgggatta atctccacgc cgggtcgtgg cgcttacgcg gccagtaaat
0491 atgcgctgga ggcgtggtca gatgcactgc gcatggagct gcgccacagc ggaattaaag tcagcctgat
0561 cgaacccggt cccattcgta ctcgcttcac cgacaacgtc aaccagacgc aaagtgataa accagtcgaa
0631 aatcccggca tcgccgcccg ctttacgttg ggaccggaag cggtggtgga caaagtacgc catgctttta
0701 ttagcgagaa gccgaagatg cgctatccgg tgacgctggt gacctgggcg gtaatggtgc ttaagcgcct
0771 gctgccgggg cgcgtgatgg acaaaatatt gcaggggtga gttgaagcgc gcgcttaagc ccccatgtca
0841 aagaaaatat cgacaacaga gagcgactcc atgtccgtag aaaatattgt caacattaac gaatctaacc
|
