MG1655
W3110
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Gene Report : ybaQ
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion 28 (LD)  ,  OCR42 (D)  ,  OCR42,43-3 (LD 28B_CRS) (D)  ,  OCR42,43-4 (LD 28B_P/O) (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ybaQ
Related strains
     Strains Search Search strains by gene name:  ybaQ   Search strains by all related name:  ybaQ b0483 ECK0477 JW0472 o131 o131a

General information  (Go to Linear View:)
 Gene Name ybaQ  
 Alternative name b0483,ECK0477,JW0472,o131,o131a  
 Location, Length 507,442 - 507,783 (  +  ) ;   10.94 min ; 342 (bp) ,   113 (aa) Go to Linear View
 Product putative DNA-binding transcriptional regulator  
 Operon Name ybaQ  
 Note  
 Function  
 Gene Ontology GO:0003677 ; DNA binding ( ybaQ )
GO:0005515 ; protein binding ( ybaQ )
GO:0006350 ; transcription ( ybaQ )
GO:0006355 ; regulation of transcription, DNA-dependent ( ybaQ )
GO:0043565 ; sequence-specific DNA binding ( ybaQ )
 PID 87081745  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) YBAQ_ECOLI ( P77303 ; Q47008 )
    -  Protein name Putative HTH-type transcriptional regulator ybaQ.  
    -  Synonyms  
    -  Gene name Name=ybaQ; OrderedLocusNames=b0483, c0603;  

 Linear View (Whole Mode)
View Location
   495.0  –  520.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ybaQ (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of The Bacterial Antitoxin Higa From Escherichia Coli At Ph 4.0. Northeast Structural Genomics Consortium Target Er390.  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Putative HTH-type transcriptional regulator ybaQ  
         PSI-BLAST Putative HTH-type transcriptional regulator ybaQ
    nr     (database updated : 2007.02.20 )
         BLAST hypothetical protein b0483 - Escherichia coli (strain K-12)  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE     

Other Cross-Reference
    COG COG3093R 
    EcoCyc ybaQ 

Sequences
Amino acid
FASTA format 
0001 MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK LTTEMAFRLA KVFDTTVDFW 
0071 LNLQAAVDLW EVENNMRTQE ELGRIETVAE YLARREERAK KVA
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             TGAGGGATGG CGCAAATGGA GTTGGAGACT 
-070 TGTTTAATGT GTTTGTATGA TTCAGTATGT TCTTGCATCG CTATTCACAA GGAAGCAACA GTTAAAAACC 
0001 atgaaacagg caacaagaaa accgacgaca cccggagata ttcttctcta tgaatatctg gaaccgctcg 
0071 atttgaaaat caatgagtta gcagagttgc tgcatgttca tcgtaatagc gtcagtgcac tgatcaataa 
0141 caatcgtaaa ctcactactg agatggcatt tcgtctggcg aaagtttttg ataccacagt cgatttttgg 
0211 ctaaacctcc aggcggcggt tgatctttgg gaagttgaaa acaacatgcg cacccaggaa gaattgggac 
0281 ggattgaaac agtggctgaa tatttggcac gccgtgaaga gcgtgcaaaa aaggtcgcgt aaGGCCAAAA 
0351 CATCGCTTCA TCTCGTAGGC CGGATAAGGC GTTCACGCCG CATCCGGCAT CCGAGCACCA TTGCCTGATG 
0421 CGACGCTTAC CCGTCTTATC AG