|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR16,17-3 (BK2-17 / AK1-17)
(D)
,
OCR17-16
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
orn
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
orn
Search strains by all related name:
orn b4162 ECK4158 JW5740 o204a yjeR
|
General information (Go to Linear View: )
|
|
Gene Name
|
orn
|
|
Alternative name
|
b4162,ECK4158,JW5740,o204a,yjeR
|
|
Location, Length
|
4,389,627 - 4,390,172
(
+
)
;
94.61
min
;
546
(bp) ,
181
(aa)
|
|
Product
|
oligoribonuclease
|
|
Operon Name
|
orn
|
|
Note
|
GO_process: GO:0006401 - RNA catabolic process
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Function
|
|
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Gene Ontology
|
GO:0003676
;
nucleic acid binding ( orn )
GO:0004518
;
nuclease activity ( orn )
GO:0004527
;
exonuclease activity ( orn )
GO:0005622
;
intracellular ( orn )
GO:0005737
;
cytoplasm ( orn )
GO:0016787
;
hydrolase activity ( orn )
GO:0016896
;
exoribonuclease activity, producing 5'-phosphomonoesters ( orn )
|
|
PID
|
87082382
|
EC number
(KEGG Pathway)
|
3.1.-.-
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
orn
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Oligoribonuclease, The Lone Essential Exoribonuclease In Escherichia Coli
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Oligoribonuclease
|
|
PSI-BLAST
|
Oligoribonuclease
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
oligoribonuclease [Escherichia coli 536]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
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PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1998;180:2779-2781
Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily.
Zhang, X., L. Zhu, and M. P. Deutscher.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSANENNLIW IDLEMTGLDP ERDRIIEIAT LVTDANLNIL AEGPTIAVHQ SDEQLALMDD WNVRTHTASG
0071 LVERVKASTM GDREAELATL EFLKQWVPAG KSPICGNSIG QDRRFLFKYM PELEAYFHYR YLDVSTLKEL
0141 ARRWKPEILD GFTKQGTHQA MDDIRESVAE LAYYREHFIK L
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ACTCAATCGT ACAGACTCCT GGTCGCCCCT
-070 GATGGGCAAA ACATCTATGA TACACGCAAT TGTGGATCAA TATAGTCACT GTGAATGGGT GGAAAATAGC
0001 atgagtgcca atgaaaacaa cctgatttgg atcgatcttg agatgaccgg tctggatccc gagcgcgatc
0071 gcattattga gattgccacg ctggtgaccg atgccaacct gaatattctg gcagaagggc cgaccattgc
0141 agtacaccag tctgatgaac agctggcgct gatggatgac tggaacgtgc gcacccatac cgccagcggg
0211 ctggtagagc gcgtgaaagc gagcacgatg ggcgatcggg aagctgaact ggcaacgctc gaatttttaa
0281 aacagtgggt gcctgcggga aaatcgccga tttgcggtaa cagcatcggt caggaccgtc gtttcctgtt
0351 taaatacatg ccggagctgg aagcctactt ccactaccgt tatctcgatg tcagcaccct gaaagagctg
0421 gcgcgccgct ggaagccgga aattctggat ggttttacca agcaggggac gcatcaggcg atggatgata
0491 tccgtgaatc ggtggcggag ctggcttact accgcgagca ttttatcaag ctgtaaAATT TTTCCTGGTC
0561 ACGTAAGCGC CGGAATCCAC TTGCGGCGGC GTGATTTTGA CGCTAAATTG AACGTCTTGC TGATAATTTC
0631 AGCACTTGAG ATAAAA
|
