|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR18
(D)
,
OCR18-4
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ytfL
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ytfL
Search strains by all related name:
ytfL b4218 ECK4214 f447 JW4177
|
General information (Go to Linear View: )
|
|
Gene Name
|
ytfL
|
|
Alternative name
|
b4218,ECK4214,f447,JW4177
|
|
Location, Length
|
4,437,895 - 4,439,238
(
-
)
;
95.65
min
;
1344
(bp) ,
447
(aa)
|
|
Product
|
inner membrane protein, UPF0053 family
|
|
Operon Name
|
ytfL
|
|
Note
|
putative transport protein
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( ytfL )
GO:0016020
;
membrane ( ytfL )
GO:0016021
;
integral to membrane ( ytfL )
|
|
PID
|
1790664
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YTFL_ECOLI
(
P39319
)
|
|
- Protein name
|
Hypothetical UPF0053 protein ytfL.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ytfL; OrderedLocusNames=b4218, c5316, z5829, ECs5196;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ytfL
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
unnamed protein product [Neisseria meningitidis serogroup B]
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0053 inner membrane protein ytfL
|
|
PSI-BLAST
|
UPF0053 inner membrane protein ytfL
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative transport protein [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MLNSILVILC LIAVSAFFSM SEISLAASRK IKLKLLADEG NINAQRVLNM QENPGMFFTV VQIGLNAVAI
0071 LGGIVGDAAF SPAFHSLFSR YMSAELSEQL SFILSFSLVT GMFILFADLT PKRIGMIAPE AVALRIINPM
0141 RFCLYVCTPL VWFFNGLANI IFRIFKLPMV RKDDITSDDI YAVVEAGALA GVLRKQEHEL IENVFELESR
0211 TVPSSMTPRE NVIWFDLHED EQSLKNKVAE HPHSKFLVCN EDIDHIIGYV DSKDLLNRVL ANQSLALNSG
0281 VQIRNTLIVP DTLTLSEALE SFKTAGEDFA VIMNEYALVV GIITLNDVMT TLMGDLVGQG LEEQIVARDE
0351 NSWLIDGGTP IDDVMRVLDI DEFPQSGNYE TIGGFMMFML RKIPKRTDSV KFAGYKFEVV DIDNYRIDQL
0421 LVTRIDSKAT ALSPKLPDAK DKEESVA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aatgccggtt cactttcttc gaatcggctt
-070 tcaatgtgta tttcacacaa attaatcaac ttccccttcc gaggatctgg cctgaaaggt cggataagat
0001 atgttaaaca gtattttagt catactctgc ttgatcgctg taagtgcgtt cttctcgatg tccgagatct
0071 cgcttgccgc ctcacgcaaa atcaaactta aactgctggc tgatgaaggc aatataaatg cccaacgcgt
0141 tctgaatatg caggaaaatc ccggcatgtt ctttaccgtg gtccaaatcg gtctgaacgc agtggcgatt
0211 ctcggcggta tcgtcggtga tgcggcattt tctccagctt ttcacagcct gttctcccgc tatatgtcgg
0281 cagagctctc tgagcaactg agctttattc tctctttctc gttagtgact ggcatgttta tcctgtttgc
0351 ggatttaacc ccgaaacgca tcggtatgat tgcgccagaa gctgtggctt tgcgtatcat caacccgatg
0421 cgcttctgcc tgtacgtttg caccccgctg gtgtggttct tcaacggcct ggcgaacata atcttccgta
0491 ttttcaaact gccaatggta cgtaaagatg acatcacttc tgatgacatc tacgcggtag tggaagccgg
0561 tgcgctggcg ggcgtgttac gtaaacagga acacgagctg attgaaaacg tctttgagct ggaatcccgt
0631 accgttccgt cttcaatgac accgcgtgaa aacgtgattt ggtttgatct ccacgaagat gagcaaagcc
0701 tgaagaataa ggtggcggaa catccgcact ctaagttcct cgtctgtaat gaagatattg accacatcat
0771 cggttatgtc gattctaaag acctgctgaa ccgcgtgctg gctaaccaaa gcctggcact gaacagcggc
0841 gtacaaattc gcaacacgct gattgtgccg gatacgttaa ccctttcaga ggcgttggaa agttttaaaa
0911 ccgcaggtga agacttcgcg gtgatcatga acgagtacgc gctggtggtg gggatcatca ccctcaatga
0981 cgtgatgacc acgctgatgg gcgatctggt cggtcagggg ctggaagagc agattgtcgc ccgtgatgag
1051 aactcatggc tgattgacgg cggcacccca attgacgacg tcatgcgcgt gctggatatt gacgagttcc
1121 cgcagtcggg caactacgaa accatcggcg gctttatgat gtttatgctg cgtaagatcc cgaaacgcac
1191 cgattcggtg aaattcgccg gctacaaatt tgaagtggtg gatatcgata actaccgcat cgaccagctg
1261 ctggtgaccc ggatcgacag caaggccacc gccctttcgc caaaactgcc tgacgctaaa gataaagaag
1331 aaagcgtcgc gtaaccccca gaaacatcaa cggctcctga atcaggagcc gtcttattac tgcatagcac
1401 tttttactgc atagcacttt ggttaagcca tctctgtttg caga
|
