|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
4
(LD)
,
OCR13,15-3 (LD 4E_CRS)
(D)
,
OCR13,15-4 (LD 4E_P/O)
(D)
,
OCR14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
phnL
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
phnL
Search strains by all related name:
phnL b4096 ECK4089 f226 JW4057
|
General information (Go to Linear View: )
|
|
Gene Name
|
phnL
|
|
Alternative name
|
b4096,ECK4089,f226,JW4057
|
|
Location, Length
|
4,315,238 - 4,315,918
(
-
)
;
93.01
min
;
681
(bp) ,
226
(aa)
|
|
Product
|
ribophosphonate triphosphate synthase subunit; predicted ATP transporter ATP-binding protein
|
|
Operon Name
|
phnCDEEFGHIJKLMNOP
|
|
Note
|
ATP-binding component of phosphonate transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006793 - phosphorus metabolic process
|
|
Function
|
enzyme; Central intermediary metabolism: Phosphorus compounds
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( phnL )
GO:0005515
;
protein binding ( phnL )
GO:0005524
;
ATP binding ( phnL )
GO:0006810
;
transport ( phnL )
GO:0015716
;
phosphonate transport ( phnL )
GO:0016887
;
ATPase activity ( phnL )
GO:0017111
;
nucleoside-triphosphatase activity ( phnL )
|
|
PID
|
1790534
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PHNL_ECOLI
(
P16679
)
|
|
- Protein name
|
Phosphonates transport ATP-binding protein phnL.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=phnL; OrderedLocusNames=b4096;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
phnL
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain 1, Malk
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Phosphonates transport ATP-binding protein phnL
|
|
PSI-BLAST
|
Methionine import ATP-binding protein metN
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
carbon-phosphorus lyase complex subunit [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ATP_GTP_A
ABC_TRANSPORTER
|
|
MMBR References
|
J Bacteriol. 1991;173(8):2665-72.
Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12.
Makino K, Kim SK, Shinagawa H, Amemura M, Nakata A.
(
1840580
)
|
J Bacteriol. 1991;173(2):587-600.
Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi.
Metcalf WW, Wanner BL.
(
1846145
)
|
J Bacteriol. 1993;175:3430-3442
Mutational analysis of an Escherichia coli fourteen-gene operon for phosphonate degradation, using TnphoA' elements.
Metcalf, W. W., and B. L. Wanner.
|
FEMS Microbiol Lett. 1992;79(1-3):133-9.
Molecular genetic studies of a 10.9-kb operon in Escherichia coli for phosphonate uptake and biodegradation.
Wanner BL, Metcalf WW.
(
1335942
)
|
J Biol Chem. 1990;265:4461-4471
Molecular biology of carbon-phosphorus bond cleavage. Cloning and sequencing of the phn (psiD) genes involved in alkylphosphonate uptake and C-P lyase activity in Escherichia coli B.
Chen, C. M., Q. Z. Ye, Z. M. Zhu, B. L. Wanner, and C. T. Walsh.
|
| Sequences |
Amino acid
FASTA format
|
0001 MINVQNVSKT FILHQQNGVR LPVLNRASLT VNAGECVVLH GHSGSGKSTL LRSLYANYLP DEGQIQIKHG
0071 DEWVDLVTAP ARKVVEIRKT TVGWVSQFLR VIPRISALEV VMQPLLDTGV PREACAAKAA RLLTRLNVPE
0141 RLWHLAPSTF SGGEQQRVNI ARGFIVDYPI LLLDEPTASL DAKNSAAVVE LIREAKTRGA AIVGIFHDEA
0211 VRNDVADRLH PMGASS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gatgcggcgt aaacgcctta tccggcctac
-070 aaatgcgctc cccgtaggtc ggataagacg cgtcagcgtc gcatccgaca cccgaaccac gaggcgaaaa
0001 atgattaacg tacaaaacgt cagtaaaacc ttcatcctgc accagcaaaa cggcgtgcgc ctgcccgtcc
0071 tcaatcgcgc ctcgctcacc gtcaacgcgg gcgaatgcgt ggtgctccac ggccattccg gcagcggcaa
0141 atcaactctg ctacgctcgc tgtacgccaa ctatctgccc gacgaaggtc aaatccagat caaacacggt
0211 gacgagtggg tagacctggt caccgcgcca gcgcgcaaag tggtggaaat ccgcaaaacc accgtcggct
0281 gggtgagcca gtttctgcgc gtcatcccgc gtatctcagc actggaagtg gtgatgcagc cgctgctcga
0351 taccggcgtt ccgcgtgaag cctgcgccgc taaagccgcg cgtcttctca cccgcctgaa cgtgccggaa
0421 cgcctgtggc acctggcacc atcgacattt tccggtggcg aacagcagcg cgtcaacatc gcccgcggct
0491 ttatcgtcga ctaccccatt ctgctgcttg acgaacctac cgcctcgctg gacgccaaaa acagcgccgc
0561 ggtggtggaa ctgattcgcg aagccaaaac ccgtggcgca gccatcgtag gcatcttcca tgacgaagct
0631 gtacgtaatg acgtcgccga ccgcctgcac ccaatgggag cctcttcatg attatcaata acgttaagct
0701 ggtgctggaa aacgaggtgg taagcggttc gctggaggtg cagaacggcg aaatccgcgc ctttgccgaa
0771 agccagagcc g
|
