MG1655
W3110
Search for
Japanese | English
Top Genes Deletions Circular Linear Motif Contigs Reference SequenceCutter Download Strains TEC
Gene Report : alsA
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion 4 (LD)  ,  OCR13,15-3 (LD 4E_CRS) (D)  ,  OCR13,15-4 (LD 4E_P/O) (D)  ,  OCR14 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  alsA
Related strains
     Strains Search Search strains by gene name:  alsA   Search strains by all related name:  alsA b4087 ECK4080 JW4048 yjcW

General information  (Go to Linear View:)
 Gene Name alsA  
 Alternative name b4087,ECK4080,JW4048,yjcW  
 Location, Length 4,307,471 - 4,309,003 (  -  ) ;   92.84 min ; 1533 (bp) ,   510 (aa) Go to Linear View
 Product fused D-allose transporter subunits of ABC superfamily: ATP-binding components  
 Operon Name rpiR-alsBACE  
 Note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function putative transport; Not classified  
 Gene Ontology GO:0000166 ; nucleotide binding ( alsA )
GO:0005351 ; sugar:hydrogen ion symporter activity ( alsA )
GO:0005515 ; protein binding ( alsA )
GO:0005524 ; ATP binding ( alsA )
GO:0005886 ; plasma membrane ( alsA )
GO:0006810 ; transport ( alsA )
GO:0008643 ; carbohydrate transport ( alsA )
GO:0015407 ; monosaccharide-transporting ATPase activity ( alsA )
GO:0016020 ; membrane ( alsA )
GO:0016787 ; hydrolase activity ( alsA )
GO:0016887 ; ATPase activity ( alsA )
GO:0017111 ; nucleoside-triphosphatase activity ( alsA )
 PID 1790525  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details [ 1 more] )
  botton Entry name(Acc.no) ALSA_ECOLI ( P32721 )
    -  Protein name D-allose transport ATP-binding protein alsA.  
    -  Synonyms  
    -  Gene name Name=alsA; OrderedLocusNames=b4087;  

 Linear View (Whole Mode)
View Location
   4295.0  –  4320.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP alsA (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Rnase-L Inhibitor  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST D-allose transport ATP-binding protein alsA  
         PSI-BLAST Ribose import ATP-binding protein rbsA
    nr     (database updated : 2007.02.20 )
         BLAST fused D-allose transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL    ATP_GTP_A    ABC_TRANSPORTER     

Other Cross-Reference
    COG COG1129G 
    EcoCyc alsA 

MMBR References
J Bacteriol. 1997;179:7631-7637
The D-allose operon of Escherichia coli K-12.
Kim, C., S. Song, and C. Park.

Sequences
Amino acid
FASTA format 
0001 MATPYISMAG IGKSFGPVHA LKSVNLTVYP GEIHALLGEN GAGKSTLMKV LSGIHEPTKG TITINNISYN 
0071 KLDHKLAAQL GIGIIYQELS VIDELTVLEN LYIGRHLTKK ICGVNIIDWR EMRVRAAMML LRVGLKVDLD 
0141 EKVANLSISH KQMLEIAKTL MLDAKVIIMD EPTSSLTNKE VDYLFLIMNQ LRKEGTAIVY ISHKLAEIRR 
0211 ICDRYTVMKD GSSVCSGIVS DVSNDDIVRL MVGRELQNRF NAMKENVSNL AHETVFEVRN VTSRDRKKVR 
0281 DISFSVCRGE ILGFAGLVGS GRTELMNCLF GVDKRAGGEI RLNGKDISPR SPLDAVKKGM AYITESRRDN 
0351 GFFPNFSIAQ NMAISRSLKD GGYKGAMGLF HEVDEQRTAE NQRELLALKC HSVNQNITEL SGGNQQKVLI 
0421 SKWLCCCPEV IIFDEPTRGI DVGAKAEIYK VMRQLADDGK VILMVSSELP EIITVCDRIA VFCEGRLTQI 
0491 LTNRDDMSEE EIMAWALPQE
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             taatgaagtg tcttatccgg ccaacaaaat 
-070 aacctgaacg tagacctgat aaatgtagcc atcaggcaat aatacgatat ttcgtgcaga gaggttattt 
0001 atggccacgc catatatatc gatggcgggg atcggcaagt cctttggtcc ggttcacgca ttaaagtcgg 
0071 ttaatttaac ggtttatcct ggtgaaatac atgcattact aggagaaaat ggcgcgggta aatccacgct 
0141 aatgaaagtt ttatccggaa tacatgagcc gaccaaaggc accattacca ttaataacat tagctataac 
0211 aagctggatc ataaattagc ggcacaactc ggtatcggga ttatttatca ggaactcagc gttattgatg 
0281 aattaaccgt actggaaaat ttatatattg gtcgtcatct gacgaaaaaa atctgtggcg tcaatattat 
0351 cgactggcga gaaatgcgtg tccgcgccgc catgatgtta ttacgcgtgg gcttgaaagt tgatctagat 
0421 gagaaagtgg cgaatttatc tatcagccac aagcagatgc tagaaattgc caaaacgctg atgctcgatg 
0491 ccaaagtcat catcatggat gaacccacct cctcactcac caataaagag gtggactatc tgtttctgat 
0561 catgaatcag ttgcgtaaag agggtacggc catcgtctat atctcgcata agttggcgga aattcgccgt 
0631 atttgcgacc gctatacggt gatgaaagac ggcagcagcg tttgcagcgg catagtaagc gatgtgtcaa 
0701 atgacgatat cgtccgtctg atggtaggcc gcgaactgca aaaccgtttt aacgcgatga aggagaatgt 
0771 cagcaacctt gcgcacgaaa cggtttttga ggtgcggaac gtcaccagtc gtgacagaaa aaaggtccgg 
0841 gatatctcat ttagcgtctg ccggggagaa atattaggct ttgccggact ggtcggttcc ggacgtactg 
0911 aactgatgaa ttgtctgttt ggcgtggata aacgcgctgg cggagaaatc cgtcttaatg gcaaagatat 
0981 ctctccacgt tcacccctgg atgccgtgaa aaaagggatg gcttacatca ctgaaagccg ccgggataac 
1051 ggttttttcc ccaacttttc catcgctcag aacatggcga tcagccgcag tctgaaagac ggcggctata 
1121 aaggcgcgat gggcttgttt catgaagttg acgagcaacg taccgctgaa aatcaacgcg aactgctggc 
1191 gctgaaatgt cattcggtaa accagaatat caccgaactc tccgggggaa atcagcagaa agtcctgatc 
1261 tccaaatggc tgtgctgttg cccggaagtg attattttcg atgaacctac ccgcggcatc gacgttggcg 
1331 cgaaagccga aatttacaaa gtgatgcgcc aactggcgga cgacggaaaa gtcatcctga tggtgtcatc 
1401 tgaactacct gaaattatca ccgtctgcga ccgcatcgcc gtgttctgcg aaggacgact gacgcaaatc 
1471 ctgacgaatc gcgatgacat gagcgaagag gagattatgg catgggcttt accacaagag taaaaagcga 
1541 agcgagcgag aagaaaccgt tcaactttgc gctgttctgg gataaatacg gcaccttttt tatcctggcg 
1611 atcatcgtcg ccatctttgg ttc