|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
2-2
(LD)
,
OCL09,11-1 (LD 2-2'_CRS)
(D)
,
OCL09,11-2 (LD 2-2'_P/O)
(D)
,
OCL10
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yiaS
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yiaS
Search strains by all related name:
yiaS b3583 ECK3572 JW3555 o231 sgbE yiaS
|
General information (Go to Linear View: )
|
|
Gene Name
|
yiaS
|
|
Alternative name
|
b3583,ECK3572,JW3555,o231,sgbE,yiaS
|
|
Location, Length
|
3,748,109 - 3,748,804
(
+
)
;
80.78
min
;
696
(bp) ,
231
(aa)
|
|
Product
|
L-ribulose-5-phosphate 4-epimerase
|
|
Operon Name
|
yiaKLMNO-lyxK-sgbHUE
|
|
Note
|
GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0005975
;
carbohydrate metabolic process ( sgbE )
GO:0008270
;
zinc ion binding ( sgbE )
GO:0008742
;
L-ribulose-phosphate 4-epimerase activity ( sgbE )
GO:0016853
;
isomerase activity ( sgbE )
GO:0019572
;
L-arabinose catabolic process ( sgbE )
GO:0046872
;
metal ion binding ( sgbE )
|
|
PID
|
1790008
|
EC number
(KEGG Pathway)
|
5.1.3.4
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
SGBE_ECOLI
(
P37680
)
|
|
- Protein name
|
Probable sugar isomerase sgbE
|
|
- Synonyms
|
EC 5.1.-.-
|
|
- Gene name
|
Name=sgbE; OrderedLocusNames=b3583;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sgbE
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
L-ribulose-5-phosphate 4-epimerase sgbE
|
|
PSI-BLAST
|
L-ribulose-5-phosphate 4-epimerase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
L-ribulose-5-phosphate 4-epimerase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MLEQLKADVL AANLALPAHH LVTFTWGNVS AVDETRQWMV IKPSGVEYDV MTADDMVVVE IASGKVVEGS
0071 KKPSSDTPTH LALYRRYAEI GGIVHTHSRH ATIWSQAGLD LPAWGTTHAD YFYGAIPCTR QMTAEEINGE
0141 YEYQTGEVII ETFEERGRSP AQIPAVLVHS HGPFAWGKNA ADAVHNAVVL EECAYMGLFS RQLAPQLPAM
0211 QNELLDKHYL RKHGANAYYG Q
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCCTGATTGA GATGTGGACC GAAAAAGCCA
-070 AAGAGCCGGT GCTGGAGATT ATTCAGGCGC GGCGTTGGAT TGAAGCGCGT ATGCAGGAGG CTGGATTTAT
0001 atgttagagc aactgaaagc cgacgtgctg gcggcgaatc tggcgcttcc cgctcaccat ctggtgacgt
0071 tcacctgggg caatgtcagc gcggtagacg aaacgcggca atggatggta atcaaacctt ccggcgtcga
0141 gtacgacgtg atgaccgccg acgatatggt ggtggttgag atagccagcg gtaaggtggt ggaaggcagc
0211 aaaaaaccct cttccgatac accaacgcat ctggcgctct accgtcgcta tgccgaaatt ggcggtattg
0281 tgcataccca ctcgcgccac gccaccatct ggtcacaggc cgggctggat ctccccgcct ggggcaccac
0351 ccacgccgat tatttttacg gtgccatccc ctgcacgcga cagatgaccg cagaggagat taacggcgaa
0421 tatgaatatc agaccggcga agtgatcatt gaaaccttcg aagaacgtgg caggagtccg gcacaaatcc
0491 cggcggtgct ggtgcattct cacggcccgt tcgcatgggg taaaaacgcc gccgatgccg tgcataacgc
0561 cgtagtactc gaagaatgcg cctatatggg tctattctcg cgccagcttg cgccgcagct ccctgcgatg
0631 caaaacgaac tgctggataa gcactacctg cgtaagcatg gggccaatgc ctattacggg cagtaaTCCC
0701 TCACGCCGGG GCTTCATCGC CCCGGCACTA CGAATTGATA TGTTCCTTGC TGTAACGCCG CTTCCACGCT
0771 GCTGGCGTTA AACCAGTATG TTTCTG
|
