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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
|
OCL17
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
nikD
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Related strains
|
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Strains Search
|
Search strains by gene name:
nikD
Search strains by all related name:
nikD b3479 ECK3463 hydC hydD JW3444 o254
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General information (Go to Linear View: )
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Gene Name
|
nikD
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Alternative name
|
b3479,ECK3463,hydC,hydD,JW3444,o254
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Location, Length
|
3,615,038 - 3,615,802
(
+
)
;
77.92
min
;
765
(bp) ,
254
(aa)
|
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Product
|
nickel transporter subunit
|
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Operon Name
|
nikABCDER
|
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Note
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ATP-binding protein of nickel transport system; ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration
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Function
|
transport; Transport of small molecules: Cations
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Gene Ontology
|
GO:0000166
;
nucleotide binding ( nikD )
GO:0005524
;
ATP binding ( nikD )
GO:0005886
;
plasma membrane ( nikD )
GO:0006810
;
transport ( nikD )
GO:0015413
;
nickel-transporting ATPase activity ( nikD )
GO:0015675
;
nickel ion transport ( nikD )
GO:0016020
;
membrane ( nikD )
GO:0016151
;
nickel ion binding ( nikD )
GO:0016787
;
hydrolase activity ( nikD )
GO:0016887
;
ATPase activity ( nikD )
GO:0017111
;
nucleoside-triphosphatase activity ( nikD )
|
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PID
|
1789890
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EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
NIKD_ECOLI
(
P33593
)
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- Protein name
|
Nickel transport ATP-binding protein nikD.
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- Synonyms
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- Gene name
|
Name=nikD; OrderedLocusNames=b3479;
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MMBR References
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Mol Microbiol. 1993;9(6):1181-91.
The nik operon of Escherichia coli encodes a periplasmic binding-protein-dependent transport system for nickel.
Navarro C, Wu LF, Mandrand-Berthelot MA.
(
7934931
)
|
Gene. 1991;107(1):37-42.
The hydC region contains a multi-cistronic operon (nik) involved in nickel transport in Escherichia coli.
Wu LF, Navarro C, Mandrand-Berthelot MA.
(
1743519
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MPQQIELRNI ALQAAQPLVH GVSLTLQRGR VLALVGGSGS GKSLTCAATL GILPAGVRQT AGEILADGKP
0071 VSPCALRGIK IATIMQNPRS AFNPLHTMHT HARETCLALG KPADDATLTA AIEAVGLENA ARVLKLYPFE
0141 MSGGMLQRMM IAMAVLCESP FIIADEPTTD LDVVAQARIL DLLESIMQKQ APGMLLVTHD MGVVARLADD
0211 VAVMSDGKIV EQGDVETLFN APKHTVTRSL VSAHLALYGM ELAS
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGGGGCTGGC GCTGTTTATC AGCGTGATGG
-070 CCTTTAACCT GGTGGGTGAC GCACTGCGCG ATCATCTGGA CCCTCATCTG GTGACGGAGC ACGCACACTA
0001 atgccgcaac agattgaact acgtaatatc gcgctacagg ccgcgcagcc gctggtacac ggtgtatcgt
0071 taaccctgca acgcgggcgc gtgctggcgt tagtcggcgg tagcggcagc gggaaatcat taacctgcgc
0141 cgcaacgctg ggcattttgc ccgctggcgt tcgccagacg gcgggggaaa ttttagccga tggcaaaccg
0211 gtttcgcctt gcgccctgcg cggcatcaaa attgccacca tcatgcagaa cccgcgcagc gcctttaatc
0281 cactgcacac catgcacacc cacgcgcggg aaacctgcct ggcgttaggg aaacccgccg atgacgctac
0351 gcttaccgct gccatagaag cggtggggct ggaaaacgcc gcgcgcgtgc tgaagctgta cccgttcgag
0421 atgagcggcg gcatgttgca gcgcatgatg attgcgatgg cggtgctgtg tgaatcaccg tttatcatcg
0491 ccgatgaacc gaccaccgac cttgacgtgg tagcacaggc gcgcatcctc gatctgctgg aaagcattat
0561 gcaaaaacaa gcgccgggaa tgctgctggt gacccatgat atgggcgttg tggcgcgtct ggcggatgac
0631 gtggcggtga tgtctgacgg taagattgtc gaacagggcg atgtagaaac gctgtttaac gcccccaaac
0701 atacagtgac gcgcagcctg gtttccgctc atctcgccct ctacggtatg gagctggcat catgaCTTTA
0771 CTTAACATCT CCGGCCTTTC CCATCACTAT GCGCACGGTG GATTTAACGG AAAACATCAA CATCAGGCGG
0841 TGCTGAATAA CGTTTCCCTG ACCCT
|
