MG1655
W3110
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Gene Report : prkB
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCL21 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  prkB
Related strains
     Strains Search Search strains by gene name:  prkB   Search strains by all related name:  prkB b3355 ECK3343 JW3318 o289 prk? yhfF

General information  (Go to Linear View:)
 Gene Name prkB  
 Alternative name b3355,ECK3343,JW3318,o289,prk?,yhfF  
 Location, Length 3,482,512 - 3,483,381 (  +  ) ;   75.06 min ; 870 (bp) ,   289 (aa) Go to Linear View
 Product putative phosphoribulokinase  
 Operon Name prkB  
 Note probable phosphoribulokinase; GO_process: GO:0006006 - glucose metabolic process  
 Function putative enzyme; Central intermediary metabolism: Miscellaneous glucose metabolism  
 Gene Ontology GO:0000166 ; nucleotide binding ( prkB )
GO:0005524 ; ATP binding ( prkB )
GO:0005975 ; carbohydrate metabolic process ( prkB )
GO:0008152 ; metabolic process ( prkB )
GO:0008974 ; phosphoribulokinase activity ( prkB )
GO:0016301 ; kinase activity ( prkB )
GO:0016740 ; transferase activity ( prkB )
 PID 2367214  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) KPPR_ECOLI ( P37307 ; P76684 )
    -  Protein name Probable phosphoribulokinase  
    -  Synonyms EC 2.7.1.19, Phosphopentokinase, PRK  
    -  Gene name Name=prkB; OrderedLocusNames=b3355, SF3374, S4389;  

 Linear View (Whole Mode)
View Location
   3470.0  –  3495.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP prkB (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain , Phosphoribulokinase From Rhodobacter Spheroides  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Probable phosphoribulokinase (Phosphopentokinase) (PRKase) (PRK)  
         PSI-BLAST Methionine import ATP-binding protein metN
    nr     (database updated : 2007.02.20 )
         BLAST predicted phosphoribulokinase [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE GLYCOSAMINOGLYCAN    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL    AMIDATION    ATP_GTP_A    PHOSPHORIBULOKINASE     

Other Cross-Reference
    COG COG3954C 
    EcoCyc prkB 

Sequences
Amino acid
FASTA format 
0001 MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR DAGRHISYFG 
0071 PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL PEPTDVLFYE GLHGGVVTPQ 
0141 HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM DSVVRSMEDY INYITPQFSR THLNFQRVPT 
0211 VDTSNPFAAK GIPSLDESFV VIHFRNLEGI DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ 
0281 RLMEGKKIE
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             TGCACGAAAC GGTCAATATT ATGCCGCGCA 
-070 GTCAGTTTCG CGAATAACCT GCAACCGTCG GCGGACGAGA TAATAATGAT AGCTAAGTCA TGGAGTTACT 
0001 atgtctgcca aacatccggt cattgcggta acaggatcca gcggcgcggg gaccaccacc accagcctcg 
0071 cgtttcgtaa aatattcgcg cagttaaatc tgcatgcagc tgaggtggaa ggcgacagtt ttcaccgtta 
0141 cacccgcccg gaaatggaca tggcgatccg caaagcgcgc gacgccgggc ggcatatcag ctacttcggc 
0211 cccgaggcta acgacttcgg cctgctggaa caaaccttca ttgaatacgg tcagagcggc aaagggaaat 
0281 ctcgcaaata tctgcatacc tacgacgaag ccgtaccgtg gaatcaggta ccggggacat tcaccccctg 
0351 gcaaccttta ccggaaccca ctgatgtact gttttatgaa ggtttacacg gcggcgtagt cacgccacag 
0421 cataacgttg cgcagcatgt ggacttactg gtcggcgtgg tgcctatcgt taaccttgag tggattcaaa 
0491 aactgatccg cgacaccagc gagcgcgggc actcacgaga agcagtgatg gactcagtag tgcgttcaat 
0561 ggaagactat atcaactaca tcacaccgca gttttcccgc acccatctta acttccagcg cgttcccacc 
0631 gtcgacactt caaacccgtt cgcggcaaaa ggtatcccgt cgctcgatga aagctttgtg gtgatccatt 
0701 ttcgtaatct ggaagggatc gatttcccct ggctgctggc gatgttgcaa ggctcattca tttcccacat 
0771 caatacgtta gtggtaccgg gcggcaaaat gggtctggca atggaattaa ttatgctgcc gctggtgcaa 
0841 cgattgatgg aaggaaagaa aatcgagtaa CTCTGCTATT ACGCCGGATA AAATACTATC CGGCTTCACA 
0911 ACGGGATAGT TAAGTCACGC GGCAACCACT TCATACGAGT GAGTAATATT CACCGCTTTT