|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yhdZ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yhdZ
Search strains by all related name:
yhdZ b3271 ECK3258 JW3239 o252
|
General information (Go to Linear View: )
|
|
Gene Name
|
yhdZ
|
|
Alternative name
|
b3271,ECK3258,JW3239,o252
|
|
Location, Length
|
3,420,458 - 3,421,216
(
+
)
;
73.72
min
;
759
(bp) ,
252
(aa)
|
|
Product
|
putative amino-acid transporter subunit
|
|
Operon Name
|
yhdWXYZ
|
|
Note
|
putative ATP-binding component of a transport system; ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( yhdZ )
GO:0005515
;
protein binding ( yhdZ )
GO:0005524
;
ATP binding ( yhdZ )
GO:0005886
;
plasma membrane ( yhdZ )
GO:0006810
;
transport ( yhdZ )
GO:0006865
;
amino acid transport ( yhdZ )
GO:0016020
;
membrane ( yhdZ )
GO:0016887
;
ATPase activity ( yhdZ )
GO:0017111
;
nucleoside-triphosphatase activity ( yhdZ )
|
|
PID
|
1789672
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YHDZ_ECOLI
(
P45769
)
|
|
- Protein name
|
Hypothetical amino-acid ABC transporter ATP-binding protein yhdZ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yhdZ; OrderedLocusNames=b3271;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yhdZ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain 1, Malk
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical amino-acid ABC transporter ATP-binding protein yhdZ
|
|
PSI-BLAST
|
Phosphate import ATP-binding protein pstB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted amino-acid transporter subunit [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ATP_GTP_A
ABC_TRANSPORTER
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQILLQPAN AMITLENVNK WYGQFHVLKN INLTVQPGER IVLCGPSGSG KSTTIRCINH LEEHQQGRIV
0071 VDGIELNEDI RNIERVRQEV GMVFQHFNLF PHLTVLQNCT LAPIWVRKMP KKEAEDLAVH YLERVRIAEH
0141 AHKFPGQISG GQQQRVAIAR SLCMKPKIML FDEPTSALDP EMVKEVLDTM IGLAQSGMTM LCVTHEMGFA
0211 RTVADRVIFM DRGEIVEQAA PDEFFAHPKS ERTRAFLSQV IH
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCCGCGCTGA TCTACTGGAT CTTCTGTTTC
-070 AGCATGTCGC GCTATAGCCA GTATCTGGAA AAACGTTTTA ACACCGGGCG TACACCGCAT TGAGGACACT
0001 atgagccaaa ttttactgca acctgctaac gcgatgatta cgctggaaaa cgtcaataaa tggtatggac
0071 aattccatgt tttgaaaaat ataaatttaa ccgtgcaacc gggagaacgg atcgttctgt gtggcccttc
0141 aggttccggt aaatcgacaa ccattcgttg tattaatcat ctggaagaac atcaacaggg acggatcgtg
0211 gtagatggca tcgaacttaa tgaagatatc cgcaatattg agcgcgtcag gcaggaagtg ggaatggtct
0281 ttcagcattt caatctcttc cctcatctga ccgttttaca gaactgtacc ctggcaccga tttgggtacg
0351 caagatgcct aagaaagagg ctgaagatct ggcggtgcat tacctagagc gggtgagaat tgccgaacat
0421 gcgcataagt ttcccggaca gatttcaggt ggtcagcagc aacgcgttgc cattgcgcgt tcgctgtgta
0491 tgaagccgaa aattatgttg tttgatgagc caacgtcggc gctcgatcct gagatggtga aagaggtgct
0561 ggatacgatg attgggctgg cgcagtcggg tatgacaatg ttgtgtgtaa cacatgagat ggggtttgca
0631 cgaaccgtcg ctgaccgggt aatttttatg gatcgtgggg aaatagtgga gcaagctgca cctgatgaat
0701 tttttgcgca tcctaaatca gagcgtacga gggcattttt atcgcaggta atccattaaT TGAATGTTAG
0771 TTCGAAAAGC AAAAAGGCCA TCCTTTCGGA TGGCCTTTCG CTTGATTTGA TGTCTGGCAG TTTATGGCGG
0841 GCGTCCTGCC CGCCACCCT
|
