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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
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OCL23
(D)
,
OCL23-14
(D)
,
OCL23-7
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
yhdX
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Related strains
|
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Strains Search
|
Search strains by gene name:
yhdX
Search strains by all related name:
yhdX b3269 ECK3256 JW5544 o368
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General information (Go to Linear View: )
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Gene Name
|
yhdX
|
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Alternative name
|
b3269,ECK3256,JW5544,o368
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Location, Length
|
3,418,156 - 3,419,337
(
+
)
;
73.67
min
;
1182
(bp) ,
393
(aa)
|
|
Product
|
putative amino-acid transporter subunit
|
|
Operon Name
|
yhdWXYZ
|
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Note
|
putative transport system permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
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Function
|
putative transport; Not classified
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Gene Ontology
|
GO:0005215
;
transporter activity ( yhdX )
GO:0005886
;
plasma membrane ( yhdX )
GO:0006810
;
transport ( yhdX )
GO:0006865
;
amino acid transport ( yhdX )
GO:0009276
;
1-2nm peptidoglycan-based cell wall ( yhdX )
GO:0016020
;
membrane ( yhdX )
GO:0016021
;
integral to membrane ( yhdX )
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|
PID
|
48994930
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EC number
(KEGG Pathway)
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|
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YHDX_ECOLI
(
P45767
)
|
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- Protein name
|
Hypothetical amino-acid ABC transporter permease protein yhdX.
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- Synonyms
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- Gene name
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Name=yhdX; OrderedLocusNames=b3269;
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| Sequences |
Amino acid
FASTA format
|
0001 MSHRRSTVKG SLSFANPTVR AWLFQILAVV AVVGIVGWLF HNTVTNLNNR GITSGFAFLD RGAGFGIVQH
0071 LIDYQQGDTY GRVFIVGLLN TLLVSALCIV FASVLGFFIG LARLSDNWLL RKLSTIYIEI FRNIPPLLQI
0141 FFWYFAVLRN LPGPRQAVSA FDLAFLSNRG LYIPSPQLGD GFIAFILAVV MAIVLSVGLF RFNKTYQIKT
0211 GQLRRTWPIA AVLIIGLPLL AQWLFGAALH WDVPALRGFN FRGGMVLIPE LAALTLALSV YTSAFIAEII
0281 RAGIQAVPYG QHEAARSLGL PNPVTLRQVI IPQALRVIIP PLTSQYLNIV KNSSLAAAIG YPDMVSLFAG
0351 TVLNQTGQAI ETIAMTMSVY LIISLTISLL MNIYNRRIAI VER
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGCGGTATTC AGTACGCACC GCCCGTGCGT
-070 TAAGTCGGTG TGAGGTAACG AGCGTCGCTA CGGCGGCGCT CTCTTCAGCG TTATGCTTTC CGAGGTTTCT
0001 atgtctcatc gccgctcaac cgttaaaggc tcactctctt ttgccaaccc tacggttcgc gcctggttat
0071 tccagatcct tgccgttgtt gctgttgtcg gcattgttgg ttggttattt cacaacactg taacgaatct
0141 caataatcgt ggcattactt caggttttgc ctttctggat cgcggcgctg gcttcggtat tgtccagcat
0211 ttgatcgatt accagcaggg cgacacctac ggacgcgttt ttattgtcgg cttactcaat acgctactgg
0281 tttctgcatt gtgtattgtg ttcgcttctg ttttgggctt ctttatcggt ctggcgagac tttcggataa
0351 ctggctgcta cgaaagcttt ccacaattta tattgagatc ttccgtaata ttcccccgct gctgcaaatc
0421 ttcttctggt actttgccgt gttgcgcaat ttgcccggac cacgccaggc tgtgagcgcg tttgatctgg
0491 cctttttgag caatcgtggg ctttatattc cgtcaccgca gctgggagac ggatttattg cgtttatcct
0561 ggctgttgtt atggctatag tcctttctgt tgggctattc cgctttaata aaacatacca gataaagacc
0631 ggacaactgc gccgcacctg gccgatcgcc gcagtgttga tcattggttt gcctttactg gcgcaatggc
0701 tttttggcgc agcactacac tgggatgtcc cagccctacg aggctttaac ttccgcggcg ggatggtttt
0771 aattcctgaa ctggcagcct taacgctggc actttcggtt tatacatctg catttatcgc cgagattatc
0841 cgcgctggga tccaggcagt gccttatggt caacatgaag cggctcggtc actgggatta cccaacccgg
0911 ttacgctacg ccaggtcatt attccccagg cattgcgggt gattattcca ccgttaacca gccagtatct
0981 caacatcgtc aaaaactcct ctcttgccgc cgctattggc tatcccgata tggtttcgct gtttgccggc
1051 accgtgctga atcagacggg gcaagccatc gagacgatag ccatgaccat gtcggtctat ctgattatca
1121 gcctgactat ctcgctgctg atgaatatct ataaccgccg catcgcgatc gttgaacgct aaGGAGTCAT
1191 GATGACAAAA GTATTGCTGT CTCATCCCCC GCGCCCGGCG AGCCATAACT CAAGCCGCGC GATGGTGTGG
1261 GTGCGAAAAA ATCTGTTCTC CA
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