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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
|
OCL42
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
ssnA
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
ssnA
Search strains by all related name:
ssnA b2879 ECK2875 JW2847 o464 o464a ygfL
|
General information (Go to Linear View: )
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|
Gene Name
|
ssnA
|
|
Alternative name
|
b2879,ECK2875,JW2847,o464,o464a,ygfL
|
|
Location, Length
|
3,017,183 - 3,018,511
(
+
)
;
65.03
min
;
1329
(bp) ,
442
(aa)
|
|
Product
|
putative chlorohydrolase/aminohydrolase
|
|
Operon Name
|
ygfK-ssnA
|
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Note
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GO_process: GO:0007049 - cell cycle
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Function
|
putative structure; Not classified
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Gene Ontology
|
GO:0008270
;
zinc ion binding ( ssnA )
GO:0016787
;
hydrolase activity ( ssnA )
GO:0016810
;
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ( ssnA )
GO:0046872
;
metal ion binding ( ssnA )
|
|
PID
|
87082177
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
ssnA
(
EG13062
)
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Number of removed
|
0 aa cleaved
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
SSNA_ECOLI
(
Q46812
;
Q47560
)
|
|
- Protein name
|
SsnA protein.
|
|
- Synonyms
|
|
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- Gene name
|
Name=ssnA; OrderedLocusNames=b2879;
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
ssnA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
Protein ssnA
|
|
PSI-BLAST
|
Urease alpha subunit
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
hypothetical protein b2879 - Escherichia coli (strain K-12)
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
RCC1_2
|
| Sequences |
Amino acid
FASTA format
|
0001 MLILKNVTAV QLHPAKVQEG VDIAIENDVI VAIGDALTQR YPDASFKEMH GRIVMPGIVC SHNHFYSGLS
0071 RGIMANIAPC PDFISTLKNL WWRLDRALDE ESLYYSGLIC SLEAIKSGCT SVIDHHASPA YIGGSLSTLR
0141 DAFLKVGLRA MTCFETTDRN NGIKELQEGV EENIRFARLI DEAKKATSEP YLVEAHIGAH APFTVPDAGL
0211 EMLREAVKAT GRGLHIHAAE DLYDVSYSHH WYGKDLLARL AQFDLIDSKT LVAHGLYLSK DDITLLNQRD
0281 AFLVHNARSN MNNHVGYNHH LSDIRNLALG TDGIGSDMFE EMKFAFFKHR DAGGPLWPDS FAKALTNGNE
0351 LMSRNFGAKF GLLEAGYKAD LTICDYNSPT PLLADNIAGH IAFGMGSGSV HSVMVNGVMV YEDRQFNFDC
0421 DSIYAQARKA AASMWRRMDA LA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGTTTAACAA CGTACCACCG GAGCTGAACG
-070 ATATGTGCCG CATCATCAGC CATGTCCACC AGCATCATCA TTATCTGCTG GGCCGCGTGG AGGTGTAATC
0001 atgttgattc tgaagaatgt cactgcggta cagctacacc cggcaaaagt gcaggaaggc gttgatatcg
0071 ccatcgaaaa cgatgtgatt gtcgctatcg gcgatgccct gacgcaacgc taccccgacg ccagcttcaa
0141 agagatgcat ggccggattg tgatgccagg gattgtctgc tcgcacaacc atttttactc ggggctttcc
0211 cgcggaatta tggcaaacat cgccccttgc ccggatttca tctcaacgct gaaaaatctc tggtggcggc
0281 tcgatcgcgc ccttgatgaa gagtcgctct attacagcgg actgatttgt tccctggaag cgattaagag
0351 cggatgtaca tcggttatcg atcaccatgc ctctccggcg tatatcggcg ggtcgctctc cacattgcgc
0421 gacgcatttt taaaagttgg cctgcgcgcg atgacctgtt ttgaaactac tgaccgtaac aacggcatca
0491 aagagttgca ggaaggtgta gaagaaaaca tccgtttcgc ccgtttgatt gatgaggcga agaaagcgac
0561 aagcgagccg tatctggtgg aagcacatat cggtgctcac gcgccgttta ccgtgccgga tgccggtctg
0631 gagatgctgc gtgaagccgt gaaagccaca ggccgtggtt tgcatattca cgctgcggaa gacctttacg
0701 acgtttccta cagtcaccac tggtacggca aagacctgct ggcacgactg gcgcaattcg atctcatcga
0771 cagcaaaacg ctggtcgctc atgggctgta cttgtcgaaa gatgacatca ccctactcaa tcagcgcgat
0841 gcgttcctgg tgcataacgc ccgttcaaac atgaacaacc atgtcggcta caaccatcac cttagcgaca
0911 tccgcaatct ggcgttggga acggacggca ttggttcgga catgtttgaa gagatgaaat ttgccttctt
0981 taaacatcgc gatgcgggtg gtccgctgtg gcctgacagt tttgccaaag ccctgactaa cggtaacgaa
1051 ctgatgagcc gcaactttgg cgcgaaattt gggcttctgg aagccggtta caaagctgat ttaaccattt
1121 gcgattacaa ctcgccgacg ccgctgctgg cagacaatat cgccgggcat atcgctttcg gtatgggctc
1191 aggcagcgtt cacagcgtga tggtcaatgg tgtgatggtc tatgaagacc gtcagtttaa cttcgattgc
1261 gattccattt atgcacaagc cagaaaagcc gctgccagta tgtggcgtcg gatggatgcg ctggcataaA
1331 TGACAGATGC CCTCTTCCCG CAGGGAAGAG GGTTAAATAA GGAAAGAAGA TGATTGAACA ATTTTTCAGG
1401 CCCGACTCTG TCGAACAGGC GCTGGAACT
|
