MG1655
W3110
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Gene Report : kduD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion ppdel-5 (LD)  ,  OCL44 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  kduD
Related strains
     Strains Search Search strains by gene name:  kduD   Search strains by all related name:  kduD b2842 ECK2840 JW2810 ygeC yqeD

General information  (Go to Linear View:)
 Gene Name kduD  
 Alternative name b2842,ECK2840,JW2810,ygeC,yqeD  
 Location, Length 2,980,519 - 2,981,280 (  -  ) ;   64.24 min ; 762 (bp) ,   253 (aa) Go to Linear View
 Product 2-deoxy-D-gluconate 3-dehydrogenase  
 Operon Name kduD  
 Note  
 Function enzyme; Central intermediary metabolism: Pool, multipurpose conversions  
 Gene Ontology GO:0003824 ; catalytic activity ( kduD )
GO:0005488 ; binding ( kduD )
GO:0008152 ; metabolic process ( kduD )
GO:0008678 ; 2-deoxy-D-gluconate 3-dehydrogenase activity ( kduD )
GO:0016491 ; oxidoreductase activity ( kduD )
GO:0051287 ; NAD binding ( kduD )
 PID 1789208  
 EC number
  (KEGG Pathway)   		1.1.1.125  
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) KDUD_ECOLI ( P37769 )
    -  Protein name 2-deoxy-D-gluconate 3-dehydrogenase  
    -  Synonyms EC 1.1.1.125, 2-keto-3- deoxygluconate oxidoreductase  
    -  Gene name Name=kduD; OrderedLocusNames=b2842;  

 Linear View (Whole Mode)
View Location
   2970.0  –  2995.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP kduD (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of Gluconate 5-Dehydrogenase (Tm0441) From Thermotoga Maritima At 2.07 A Resolution  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST 2-deoxy-D-gluconate 3-dehydrogenase  
         PSI-BLAST 3-oxoacyl-[acyl-carrier-protein] reductase
    nr     (database updated : 2007.02.20 )
         BLAST 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    AMIDATION    ATP_GTP_A    ADH_SHORT     

Other Cross-Reference
    COG COG1028IQR 
    EcoCyc kduD 

Sequences
Amino acid
FASTA format 
0001 MILSAFSLEG KVAVVTGCDT GLGQGMALGL AQAGCDIVGI NIVEPTETIE QVTALGRRFL SLTADLRKID 
0071 GIPALLDRAV AEFGHIDILV NNAGLIRRED ALEFSEKDWD DVMNLNIKSV FFMSQAAAKH FIAQGNGGKI 
0141 INIASMLSFQ GGIRVPSYTA SKSGVMGVTR LMANEWAKHN INVNAIAPGY MATNNTQQLR ADEQRSAEIL 
0211 DRIPAGRWGL PSDLMGPIVF LASSASDYVN GYTIAVDGGW LAR
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             tctggggcat ggtcggtgaa aaccaggtct 
-070 ttgatgatat ggaccatgtg gccgttaaag atttgcgcta gttgtgggca taaacgaata aggtattgtt 
0001 atgattttaa gtgcattttc tctcgaaggt aaagttgcgg tcgtcactgg ttgtgatact ggactgggtc 
0071 aggggatggc gttggggctg gcgcaagcgg gctgtgacat tgttggcatt aacatcgttg aaccgactga 
0141 aaccatcgag caggtcacag cgctggggcg tcgtttttta agcctgaccg ccgatctgcg aaagattgat 
0211 ggtattccag cactgctgga tcgcgcggta gcggagtttg gtcatattga tatcctggtg aataacgccg 
0281 gattgattcg ccgcgaagat gctctcgagt tcagcgaaaa ggactgggac gatgtcatga acctgaatat 
0351 caagagcgta ttcttcatgt ctcaggcagc ggcgaaacac tttatcgcgc aaggcaatgg cggcaagatt 
0421 atcaatatcg cgtcaatgct ctccttccag ggcgggatcc gtgtgccttc ttataccgca tcaaaaagcg 
0491 gcgtgatggg tgtgacgcga ttgatggcga acgaatgggc taaacacaac attaatgtta atgcgatagc 
0561 cccgggttac atggcgacca acaatactca acaactacgg gcagatgaac aacgtagcgc ggaaattctc 
0631 gaccgcattc cagctggtcg ttggggactg ccgagtgacc tgatggggcc gatagtgttc cttgcctcca 
0701 gcgcttcaga ttatgtgaat ggttatacca ttgccgtgga tggcggttgg ctggcgcgtt aattcattct 
0771 tcttactttt atgaccctgc cgcatggcag ggttttttat acctgtagat catcataatc catatcatgg 
0841 ttatgaaata atccatatta at