|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL45-10
(D)
,
OCL45-6
(D)
,
OCL45-7
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygcW
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygcW
Search strains by all related name:
ygcW b2774 ECK2768 f286 JW5443
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygcW
|
|
Alternative name
|
b2774,ECK2768,f286,JW5443
|
|
Location, Length
|
2,897,510 - 2,898,295
(
-
)
;
62.45
min
;
786
(bp) ,
261
(aa)
|
|
Product
|
putative dehydrogenase
|
|
Operon Name
|
ygcW
|
|
Note
|
putative oxidoreductase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( ygcW )
GO:0005488
;
binding ( ygcW )
GO:0008152
;
metabolic process ( ygcW )
GO:0016491
;
oxidoreductase activity ( ygcW )
|
|
PID
|
87082160
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YGCW_ECOLI
(
P76633
;
P78216; Q46913
)
|
|
- Protein name
|
Hypothetical oxidoreductase ygcW
|
|
- Synonyms
|
EC 1.-.-.-
|
|
- Gene name
|
Name=ygcW; OrderedLocusNames=b2774;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcW
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Tropinone Reductase-I Complex With Nadp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical oxidoreductase ygcW
|
|
PSI-BLAST
|
3-oxoacyl-[acyl-carrier-protein] reductase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted deoxygluconate dehydrogenase [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ADH_SHORT
|
| Sequences |
Amino acid
FASTA format
|
0001 MSIESLNAFS MDFFSLKGKT AIVTGGNSGL GQAFAMALAK AGANIFIPSF VKDNGETKEM IEKQGVEVDF
0071 MQVGITAEGA PQKIIAACCE RFGTVDILVN NAGICKLNKV LDFGRADWDP MIDVNLTAAF ELSYEAAKIM
0141 IPQKSGKIIN ICSLFSYLGG QWSPAYSATK HALAGFTKAY CDELGQYNIQ VNGIAPGYYA TDITLATRSN
0211 PETNQRVLDH IPANRWGDTQ DLMGAAVFLA SPASNYVNGH LLVVDGGYLV R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaattatctc cagttaccag agataatgag
-070 aaaggtaact tccctctcgc gggggaagtt acctttcttt ttttttgcct tacggaaatt ggagctaact
0001 atgtcaatcg aatctctcaa tgcgttctca atggattttt tctccctgaa aggtaaaacc gcaattgtta
0071 ccggtgggaa tagcggttta ggccaggcat ttgccatggc gttggccaaa gctggcgcaa atatctttat
0141 tcctagtttc gtcaaagata acggcgaaac aaaggaaatg attgaaaaac agggtgttga ggtggacttc
0211 atgcaggtgg gtatcaccgc agaaggcgcg ccgcagaaga ttatcgctgc ttgctgtgag cgtttcggta
0281 cagttgatat tctggttaac aatgccggta tttgtaagct gaataaggtg ctggacttcg gtcgtgccga
0351 ctgggatccg atgattgatg tgaacctgac cgccgcattc gagttaagct atgaagctgc aaaaattatg
0421 atcccgcaga aaagcggcaa aattattaat atctgttcat tgttctctta cttaggtgga caatggtcac
0491 ctgcatattc tgccactaaa catgctcttg ccgggttcac caaagcttat tgtgatgaac taggtcaata
0561 taatattcag gtaaatggta tcgcccctgg ctattatgca acagatatta cgctggcgac acgcagtaat
0631 ccagaaacca atcagcgcgt tcttgatcat attccggcaa accgttgggg cgatactcag gatttaatgg
0701 gcgcagccgt attcctcgca agtccggcat cgaattatgt caacgggcat ttattagtgg ttgatggcgg
0771 ttatttagtg cgctaaccca taacggtggt ttctgttttc tcttattaat gattattcca tttttattat
0841 caggaaggaa ttactatgtc tttatctcgc gcagcgattg tcgacc
|
