MG1655
W3110
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Gene Report : oxc
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion OCL62 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  oxc
Related strains
     Strains Search Search strains by gene name:  oxc   Search strains by all related name:  oxc b2373 ECK2369 f564 JW2370 yfdU

General information  (Go to Linear View:)
 Gene Name oxc  
 Alternative name b2373,ECK2369,f564,JW2370,yfdU  
 Location, Length 2,488,278 - 2,489,972 (  -  ) ;   53.63 min ; 1695 (bp) ,   564 (aa) Go to Linear View
 Product oxalyl CoA decarboxylase, ThDP-dependent  
 Operon Name oxc  
 Note  
 Function enzyme; Oxalate catabolism  
 Gene Ontology GO:0000287 ; magnesium ion binding ( yfdU )
GO:0003824 ; catalytic activity ( yfdU )
GO:0008949 ; oxalyl-CoA decarboxylase activity ( yfdU )
GO:0016829 ; lyase activity ( yfdU )
GO:0016831 ; carboxy-lyase activity ( yfdU )
GO:0030976 ; thiamin pyrophosphate binding ( yfdU )
 PID 1788716  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) OXC_ECOLI ( P78093 ; P78194; P78195 )
    -  Protein name Probable oxalyl-CoA decarboxylase  
    -  Synonyms EC 4.1.1.8  
    -  Gene name Name=yfdU; OrderedLocusNames=b2373, z3637, ECs3253;  

 Linear View (Whole Mode)
View Location
   2475.0  –  2500.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP oxc (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex With The Cofactor Derivative Thiamin-2-Thiazolone Diphosphate And Adenosine Diphosphate  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Probable oxalyl-CoA decarboxylase  
         PSI-BLAST Acetolactate synthase 1, chloroplast precursor
    nr     (database updated : 2007.02.20 )
         BLAST hypothetical protein Z3637 [Escherichia coli O157:H7 EDL933]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    AMIDATION    RGD    TOPOISOMERASE_II     

Other Cross-Reference
    COG COG0028EH 
    EcoCyc oxc 

Sequences
Amino acid
FASTA format 
0001 MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA AAASGFLTQK 
0071 PGICLTVSAP GFLNGLTALA NATVNGFPMI MISGSSDRAI VDLQQGDYEE LDQMNAAKPY AKAAFRVNQP 
0141 QDLGIALARA IRVSVSGRPG GVYLDLPANV LAATMEKDEA LTTIVKVENP SPALLPCPKS VTSAISLLAK 
0211 AERPLIILGK GAAYSQADEQ LREFIESAQI PFLPMSMAKG ILEDTHPLSA AAARSFALAN ADVVMLVGAR 
0281 LNWLLAHGKK GWAADTQFIQ LDIEPQEIDS NRPIAVPVVG DIASSMQGML AELKQNTFTT PLVWRDILNI 
0351 HKQQNAQKMH EKLSTDTQPL NYFNALSAVR DVLRENQDIY LVNEGANTLD NARNIIDMYK PRRRLDCGTW 
0421 GVMGIGMGYA IGASVTSGSP VVAIEGDSAF GFSGMEIETI CRYNLPVTIV IFNNGGIYRG DGVDLSGAGA 
0491 PSPTDLLHHA RYDKLMDAFR GVGYNVTTTD ELRHALTTGI QSRKPTIINV VIDPAAGTES GHITKLNPKQ 
0561 VAGN
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             atagcgacga tgaaattgct gcaatgaagc 
-070 aaaaccacgc catctgatat taacgggggc ttctggctcc caatttataa aaatttcgag gttattaatc 
0001 atgtcagatc aacttcaaat gacagatggt atgcatatca tcgttgaagc attaaaacag aataatattg 
0071 acactattta tggtgttgta ggtattcctg tgacggatat ggcacgccat gcccaggcgg aaggcattcg 
0141 ttatattggt tttcgtcatg agcagtcggc aggctatgcc gctgcggcaa gcggttttct tacccaaaaa 
0211 ccggggatct gcctgacagt ttctgcgcca ggattcctca atggtttgac cgcattggcc aacgcaacgg 
0281 taaatggttt tccgatgatc atgattagcg gctccagcga ccgcgcgatc gtcgacctac agcaaggtga 
0351 ttatgaagag ctggaccaaa tgaatgcggc aaaaccgtat gccaaagcag catttcgcgt taatcagccg 
0421 caggatcttg gcattgcatt ggcacgcgct atccgggtct ctgtatcggg tcgccctggc ggagtttatc 
0491 ttgatttgcc agcaaatgtc ctggccgcga cgatggaaaa agacgaagcg ttaaccacga ttgttaaagt 
0561 tgaaaatccg tcgccagcat tattgccatg cccgaagtca gtcactagcg caatttcgct tttagcaaaa 
0631 gctgaacggc cattaattat ccttggcaaa ggcgcggcgt attcacaagc tgatgaacag cttcgtgaat 
0701 ttattgaaag tgctcagatt ccattcctgc caatgtctat ggcgaaaggg atccttgaag atacgcatcc 
0771 actttctgcg gcagctgcgc gttcgtttgc cctggcaaat gctgacgttg tcatgcttgt tggtgcacga 
0841 ctgaattggt tattggcaca cggtaaaaaa ggatgggcgg cagatacaca gtttattcaa ctggatattg 
0911 aaccgcagga aattgacagc aaccgcccca ttgctgtgcc agtcgttggt gatattgcat ccagtatgca 
0981 aggtatgctg gcagaactga aacaaaacac atttacgact ccactggtat ggcgcgatat tttaaatatc 
1051 cacaagcagc aaaatgcaca aaaaatgcat gaaaaattaa gtacagatac tcaaccatta aattacttta 
1121 atgcattaag tgctgtgcgc gacgtattgc gcgagaacca ggatatttat ttagttaatg aaggtgcaaa 
1191 taccctggat aatgcacgaa atattattga tatgtataaa ccacgtcgtc gtctggattg tggtacctgg 
1261 ggtgtcatgg gcatcggtat gggctatgcc atcggtgcta gcgtgacttc tggttctccg gttgtcgcca 
1331 ttgaaggtga tagtgctttt ggtttcagtg ggatggaaat tgaaacgatt tgtcgatata acctgccggt 
1401 gacgatcgtt atttttaata atggcggcat ctacagagga gacggtgttg atctcagtgg cgctggtgca 
1471 ccatcaccaa cggatctgtt gcaccatgca aggtatgaca aattaatgga tgcgtttcgt ggcgttggct 
1541 ataacgtcac cacgacagat gaacttcgtc atgctttaac caccggtatt cagtcgcgca aaccgaccat 
1611 tattaatgtg gtcatcgacc ctgcagcagg aactgaaagt ggccatatta ccaaacttaa cccaaaacaa 
1681 gtcgctggta attaaatact gacatcgtct cctcttgcca actcattatg cgatggtgag gggaccctta 
1751 tcggaaatac tattatgcta acatttttta ttggcgattt attgc