|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
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References (PMID)
|
|
|
Deletion
|
DE(xthA-pncA)90
,
LD3-17-1
(LD)
,
OCL84,85-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ynjC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ynjC
Search strains by all related name:
ynjC b1755 ECK1753 JW5285 o496
|
General information (Go to Linear View: )
|
|
Gene Name
|
ynjC
|
|
Alternative name
|
b1755,ECK1753,JW5285,o496
|
|
Location, Length
|
1,835,236 - 1,836,771
(
+
)
;
39.56
min
;
1536
(bp) ,
511
(aa)
|
|
Product
|
putative inner membrane ABC transporter permease, function unknown
|
|
Operon Name
|
ydjXYZ-ynjABCD
|
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Note
|
putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ynjC )
GO:0005886
;
plasma membrane ( ynjC )
GO:0006810
;
transport ( ynjC )
GO:0016020
;
membrane ( ynjC )
GO:0016021
;
integral to membrane ( ynjC )
|
|
PID
|
145693149
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YNJC_ECOLI
(
P76224
;
P76908
)
|
|
- Protein name
|
Hypothetical ABC transporter permease protein ynjC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ynjC; OrderedLocusNames=b1755;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ynjC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein ynjC
|
|
PSI-BLAST
|
Inner membrane ABC transporter permease protein ynjC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein ynjC
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
GRAM_POS_ANCHORING
|
| Sequences |
Amino acid
FASTA format
|
0001 MATPLRYALI FLLWAMVAVI YAPLIPAALT LISPALSLTH WQALFADPQL PQALLATLVS TTIAAVGALL
0071 IALLVIVALW PGPKWQRMCA RLPWLLAIPH VAFATSALLL FADGGLLYDY FPYFTPPMDR FGIGLGLTLA
0141 VKESAFLLWI LAAVLSEKWL LQQVIVLDSL GYSRWQCLNW LLLPSVAPAL AMAMLAIVAW SLSVVDVAII
0211 LGPGNPPTLA VISWQWLTQG DIDQQTKGAL ASLLLMLLLA AYVLLSYLLW RSWRRTIPRV DGVRKPATPL
0281 LPGNTLAIFL PLTGVLCVVL LAILADQSTI NSEALINSLT MGLVATFIAL LLLLLWLEWG PQRRQLWLWL
0351 PILLPALPLV AGQYTLALWL KLDGSWTAVV WGHLLWVMPW MLFILQPAWQ RIDSRLILIA QTLGWSRAKI
0421 FFYVKCPLML RPVLIAFAVG FAVGIAQYMP TLWLGAGRFP TLTTEAVALS SGGSNGILAA QALWQLLLPL
0491 IIFALTALVA KWVGYVRQGL R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CTGACGGGCA GCGCGAATCA TTGCAATCAA
-070 GAATGCCGCA GGATCTGCCG CCGGTACTGG CTGAACCGCA CGCAGGTTGG GTAAATGCGC TGGAACAAGA
0001 atggctacac cgttacggta cgcattaatc tttttgctgt gggcgatggt ggcggtgatt tatgcaccgc
0071 tgatcccggc agctctcacg ctgatatcgc ctgctttgtc gttgacacac tggcaggcgt tatttgccga
0141 tccacagtta ccgcaggcat tactggcaac gctggtgtcg acaaccatcg cggcggtcgg ggcattgttg
0211 attgccctgc tggtgattgt ggcgctgtgg cctgggccga aatggcagcg tatgtgcgcc cgtctgccgt
0281 ggctgctcgc cattccccat gtggcttttg ccaccagcgc ccttctgctc tttgctgacg gagggctgct
0351 ttatgactat ttcccgtatt tcactccgcc aatggaccga tttggcatcg gtctgggcct cacccttgca
0421 gtgaaagaaa gcgcatttct gctgtggatc ttagcagcag tattgagcga aaaatggctg ttgcagcagg
0491 tcattgtgct ggattcgctg ggctacagcc gctggcaatg cctgaactgg ctgctgttgc cctccgtcgc
0561 gcctgcgctg gcaatggcga tgctggcgat tgttgcctgg tcgctgtcgg tcgtggatgt ggcaattatt
0631 ctcgggccag gtaatccccc gacgctggcg gtaattagct ggcagtggtt aacccagggc gacattgacc
0701 aacaaacaaa aggcgcgctt gccagcctgc tgttgatgct gttactcgcc gcctacgttt tgctgagcta
0771 tctgctatgg cgcagctggc ggcgcactat tccccgcgta gatggcgttc gcaagcctgc cacgccttta
0841 ttgccgggca atacgctggc gattttttta cccttaaccg gtgtgctgtg tgtggttctg ctggcgatcc
0911 tcgcggatca gtcgacgatc aatagtgaag cgctcatcaa cagcctgaca atggggctgg tggcgacatt
0981 catcgctttg ctcctgttac tgctgtggct ggaatggggg ccacagcgtc gccagttgtg gctatggttg
1051 cccattttat tacctgctct gccactggtg gcgggccagt acacgctggc gctatggctg aaactggatg
1121 gaagctggac ggcggtggtc tgggggcatc tgctgtgggt gatgccgtgg atgctgttta tcctgcaacc
1191 cgcctggcag cgcattgatt cacggttaat tttgattgcg caaacactgg gctggtcgcg ggccaaaatc
1261 ttcttttacg tgaaatgccc actcatgttg cgccctgtgc tgattgcctt cgcggtggga tttgcagtcg
1331 gtattgcgca gtatatgcca acgctgtggc tgggcgcggg gcgttttccg acgctcacca ctgaggcggt
1401 ggcattaagc agcggcggca gcaacggtat tctcgccgcc caggctttat ggcaactgct attaccgctt
1471 attatttttg ccctgaccgc gttagtcgca aaatgggtag gttatgtcag acaaggactc cgctaaTGCT
1541 CTGCGTGAAA AATGTTTCGC TACGTTTACC AGAAAGCCGC TTGCTGACAA ACGTTAACTT TACGGTGGAT
1611 AAAGGTGACA TTGTCACGTT AATGGG
|
