|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yddB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yddB
Search strains by all related name:
yddB b1495 ECK1489 f790 JW1490
|
General information (Go to Linear View: )
|
|
Gene Name
|
yddB
|
|
Alternative name
|
b1495,ECK1489,f790,JW1490
|
|
Location, Length
|
1,573,271 - 1,575,643
(
-
)
;
33.91
min
;
2373
(bp) ,
790
(aa)
|
|
Product
|
putative porin protein
|
|
Operon Name
|
yddAB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0004872
;
receptor activity ( yddB )
GO:0005215
;
transporter activity ( yddB )
GO:0006810
;
transport ( yddB )
GO:0016020
;
membrane ( yddB )
|
|
PID
|
1787771
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YDDB_ECOLI
(
P31827
;
P77572
)
|
|
- Protein name
|
Hypothetical protein yddB
|
|
- Synonyms
|
CDS103
|
|
- Gene name
|
Name=yddB; OrderedLocusNames=b1495;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yddB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yddB
|
|
PSI-BLAST
|
Hypothetical protein yddB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted porin protein [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
ATP_GTP_A
|
| Sequences |
Amino acid
FASTA format
|
0001 MKRVLIPGVI LCGADVAQAV DDKNMYMHFF EEMTVYAPVP VPVNGNTHYT SESIERLPTG NGNISDLLRT
0071 NPAVRMDSTQ STSLNQGDIR PEKISIHGAS PYQNAYLIDG ISATNNLNPA NESDASSATN ISGMSQGYYL
0141 DVSLLDNVTL YDSFVPVEFG RFNGGVIDAK IKRFNADDSK VKLGYRTTRS DWLTSHIDEN NKSAFNQGSS
0211 GSTYYSPDFK KNFYTLSFNQ ELADNFGVTA GLSRRQSDIT RADYVSNDGI VAGRAQYKNV IDTALSKFTW
0281 FASDRFTHDL TLKYTGSSRD YNTSTFPQSD REMGNKSYGL AWDMDTQLAW AKLRTTVGWD HISDYTRHDH
0351 DIWYTELSCT YGDITGRCTR GGLGHISQAV DNYTFKTRLD WQKFAVGNVS HQPYFGAEYI YSDAWTERHN
0421 QSESYVINAA GKKTNHTIYH KGKGRLGIDN YTLYMADRIS WRNVSLMPGV RYDYDNYLSN HNISPRFMTE
0491 WDIFANQTSM ITAGYNRYYG GNILDMGLRD IRNSWTESVS GNKTLTRYQD LKTPYNDELA MGLQQKIGKN
0561 VIARANYVYR EAHDQISKSS RTDSATKTTI TEYNNDGKTK THSFSLSFEL AEPLHIRQVD INPQIVFSYI
0631 KSKGNLSLNN GYEESNTGDN QVVYNGNLVS YDSVPVADFN NPLKISLNMD FTHQPSGLVW ANTLAWQEAR
0701 KARIILGKTN AQYISEYSDY KQYVDEKLDS SLTWDTRLSW TPQFLQQQNL TISADILNVL DSKTAVDTTN
0771 TGVATYASGR TFWLDVSMKF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acacatcaac ccggtgtctg gaacctggcc
-070 gatgatattt gtgacattag cgcggtttta taaaaacaat aaaagccctg ctgtacggag atataaataa
0001 atgaagcgag ttcttattcc tggcgtcatt ttatgtggcg ctgatgtggc gcaggccgtc gatgacaaaa
0071 acatgtacat gcattttttt gaagagatga cggtctatgc tcctgtccct gtacccgtaa acggcaacac
0141 gcattacacc agtgaaagca tcgagcgttt accgaccggg aatggcaata tcagcgatct gctgagaacc
0211 aaccctgcgg tacgcatgga ttcaacgcaa agtacctcgt tgaaccaggg agatattcgc cctgagaaaa
0281 tctctattca cggtgcgtcg ccctaccaga atgcctattt gattgacggt attagtgcaa ctaataacct
0351 gaacccagcg aatgagtccg atgccagtag tgcaaccaat attagcggga tgtcacaggg gtattatctt
0421 gatgtcagct tactggacaa tgtgacgctt tatgacagtt ttgtgccggt tgaatttggt cgcttcaatg
0491 gcggggtaat tgatgcaaag atcaaacgct tcaacgctga tgatagcaag gtgaaattgg gttatcgcac
0561 tacgcgttcg gactggttaa catcgcatat cgatgagaat aacaagagcg catttaatca aggctcttca
0631 ggaagtactt attactcccc agattttaaa aagaactttt ataccttgtc gtttaatcag gaactcgctg
0701 ataacttcgg cgttaccgcc ggtttatcgc gccgccagtc tgatatcacc cgcgcggatt atgtttcgaa
0771 tgacggcatt gtcgccggtc gggcacagta taaaaacgtt atcgatactg cattaagcaa atttacctgg
0841 tttgccagcg accgctttac ccacgattta accttaaaat ataccggctc cagccgtgat tataatacca
0911 gcaccttccc gcagtctgat cgcgaaatgg gtaataaatc ctatggtctg gcatgggata tggatacgca
0981 gctcgcatgg gccaaactgc gtaccaccgt tggttgggat catattagtg attatacccg tcacgatcat
1051 gacatctggt acaccgaact ttcatgtaca tatggtgata ttacagggcg ttgcacccgt ggcggattag
1121 gacacatttc ccaggctgta gataattaca ccttcaaaac acgcctggac tggcaaaaat tcgccgtggg
1191 taatgtttcg catcaaccct acttcggcgc ggaatacatc tattccgatg cgtggactga acgccataac
1261 cagtctgaat cctatgtgat taatgctgcc ggaaagaaaa ctaaccatac catttaccat aaaggtaaag
1331 gccgcctggg aattgacaac tacacgctgt atatggcgga tcgcattagc tggcgtaatg tgtcattaat
1401 gcccggcgtg cggtatgact atgacaacta tctgtcaaac cacaatatct ccccgcgctt tatgacggaa
1471 tgggatattt ttgctaatca aacctcaatg attacagcag gttataaccg ttactatggc gggaatattc
1541 ttgatatggg attacgtgat atccgcaata gctggacgga atcggtatca ggtaataaaa ctctgacgcg
1611 ttatcaggat ttgaaaacgc cttataacga tgaactggca atgggattgc agcagaaaat cggtaagaac
1681 gttattgcgc gtgcaaacta tgtttaccgt gaagcgcatg atcaaatcag caaaagcagt cgtaccgaca
1751 gcgcgactaa aaccaccatt actgaatata acaacgatgg caaaaccaaa acgcattcgt tcagcctcag
1821 ttttgaactg gccgaacccc tgcatatccg ccaggtagat attaacccac aaattgtctt tagctatatc
1891 aagagcaagg gcaacttgtc gttaaacaat ggttatgagg agagcaatac cggtgataac caggtggttt
1961 ataacggtaa tctggtctct tacgatagcg ttccagtggc agattttaat aacccattaa agatctcctt
2031 aaacatggat ttcacgcatc aaccgagcgg gttagtgtgg gcgaatacgc tggcctggca agaagcgcgt
2101 aaagctcgca ttatccttgg taagacaaat gcgcaataca tcagcgaata ttcagattac aagcagtatg
2171 ttgacgaaaa actggatagc agcctgacct gggacacccg cttgtcctgg acgccacaat ttctgcaaca
2241 acaaaacctg acgatcagtg ccgatattct caatgtactg gatagcaaaa ccgctgttga tacaacgaac
2311 accggtgtgg cgacctacgc cagtggccgt actttctggc ttgatgtcag catgaaattt taatagttcg
2381 gattttactt aaccgggtaa attcgcccgg ttttcgcatg gagataatta tgagaaacct ctgtttctta
2451 ctgacgttag tggcaactct gtt
|
